C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pumilio RNA-binding family member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030315 Pum1-001 ENSMUSG00000028580 10090 + 4:130663321-130781564 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030315
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030315 11.801±0.52 16.539±1.38 5.910±0.03 11.632±2.17 7.083±3.39 2.867±0.37 4.504±0.07 6.526±0.76 5.350±1.36 8.278±1.45 2.076±1.14 4.857±2.53 7.516±0.75 8.675±3.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002AG CIL_0002AG_0002 CGP 4:130531602-130781564
CIL_0002AF CIL_0002AF_0002 CGP 4:130663321-130826319

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0006417 IEA regulation of translation
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000122308 pum1-201 protein_coding Danio_rerio 0 887
ENSDART00000086578 pum2-201 protein_coding Danio_rerio 0 292
ENSDART00000127137 pum1-202 protein_coding Danio_rerio 0 196
ENST00000257075 PUM1-001 protein_coding Homo_sapiens 0 6072
ENST00000319801 PUM2-201 protein_coding Homo_sapiens 0 608
ENST00000338086 PUM2-001 protein_coding Homo_sapiens 0 654
ENST00000361078 PUM2-202 protein_coding Homo_sapiens 0 654
ENST00000373741 PUM1-002 protein_coding Homo_sapiens 0 5770
ENST00000373742 PUM1-011 protein_coding Homo_sapiens 0 4194
ENST00000373747 PUM1-004 protein_coding Homo_sapiens 0 6135
ENST00000403432 PUM2-002 protein_coding Homo_sapiens 0 654
ENST00000424085 PUM1-014 protein_coding Homo_sapiens 0 3914
ENST00000426105 PUM1-010 protein_coding Homo_sapiens 0 5890
ENST00000440538 PUM1-013 protein_coding Homo_sapiens 0 2964
ENST00000440577 PUM2-003 protein_coding Homo_sapiens 0 608
ENST00000471894 PUM1-008 retained_intron Homo_sapiens 0 532
ENST00000480602 PUM1-009 nonsense_mediated_decay Homo_sapiens 0 747
ENST00000490546 PUM1-007 processed_transcript Homo_sapiens 0 654
ENST00000498419 PUM1-005 protein_coding Homo_sapiens 0 4196
ENST00000498627 PUM1-006 retained_intron Homo_sapiens 0 440
ENST00000524516 PUM1-017 retained_intron Homo_sapiens 0 850
ENST00000525843 PUM1-012 protein_coding Homo_sapiens 0 3258
ENST00000525948 PUM1-015 nonsense_mediated_decay Homo_sapiens 0 1304
ENST00000525997 PUM1-022 protein_coding Homo_sapiens 0 523
ENST00000526128 PUM1-019 processed_transcript Homo_sapiens 0 436
ENST00000526215 PUM1-016 nonsense_mediated_decay Homo_sapiens 0 584
ENST00000527498 PUM1-021 nonsense_mediated_decay Homo_sapiens 0 651
ENST00000529846 PUM1-024 protein_coding Homo_sapiens 0 628
ENST00000530669 PUM1-023 nonsense_mediated_decay Homo_sapiens 0 534
ENST00000531867 PUM1-020 protein_coding Homo_sapiens 0 531
ENST00000532678 PUM1-018 protein_coding Homo_sapiens 0 697

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