C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028949 Smarcd3 10090 - 5:24590818-24602012 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030791 Smarcd3-001 24592622-24602012 protein_coding
  ENSMUST00000123223 Smarcd3-007 24595164-24595846 retained_intron
  ENSMUST00000140744 Smarcd3-005 24595867-24601900 retained_intron
  ENSMUST00000143501 Smarcd3-004 24595644-24601935 retained_intron
  ENSMUST00000144518 Smarcd3-008 24595746-24596989 retained_intron
  ENSMUST00000144995 Smarcd3-002 24590818-24601976 retained_intron
  ENSMUST00000145565 Smarcd3-003 24595735-24598938 retained_intron
  ENSMUST00000147857 Smarcd3-006 24594695-24596849 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030791ENSMUST00000144995
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030791 N/A N/A 22.029±0.06 40.234±16.63 9.895±0.00 N/A 20.838±2.77 N/A N/A N/A 86.429±12.84 11.777±1.92 N/A 2.573±1.12
ENSMUST00000144995 5.565±1.60 5.055±0.69 N/A 6.915±0.00 13.597±0.00 2.937±0.66 N/A 1.842±0.32 1.846±0.70 3.333±0.60 N/A 6.735±1.49 5.605±3.55 1.124±0.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T1 CIL_0008T1_0002 VISTA 5:24041638-24646055
CIL_0007RX CIL_0007RX_0002 VISTA 5:24430554-25031843
CIL_0006DG CIL_0006DG_0003 CGP 5:24586741-24602012
CIL_0004EL CIL_0004EL_0002 CGP 5:24590818-24710555

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000790 IEA nuclear chromatin
GO:0002052 IEA positive regulation of neuroblast proliferation
GO:0003007 IMP heart morphogenesis
GO:0003139 IMP secondary heart field specification
GO:0003219 IMP cardiac right ventricle formation
GO:0003407 IEP neural retina development
GO:0005102 IEA receptor binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006337 IEA nucleosome disassembly
GO:0006338 IEA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0008134 IEA transcription factor binding
GO:0016922 IEA ligand-dependent nuclear receptor binding
GO:0030374 IEA ligand-dependent nuclear receptor transcription coactivator activity
GO:0035257 IEA nuclear hormone receptor binding
GO:0042692 IMP muscle cell differentiation
GO:0043393 IDA regulation of protein binding
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0071564 IDA npBAF complex
GO:0071565 IDA nBAF complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019969 smarcd3b SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3b protein_coding Danio_rerio
ENSDARG00000038786 smarcd3a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3a protein_coding Danio_rerio
ENSG00000082014 SMARCD3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 protein_coding Homo_sapiens

Loading