C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000082014 SMARCD3 9606 - 7:151238764-151277896 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000262188 SMARCD3-002 151238973-151248973 protein_coding
  ENST00000356800 SMARCD3-201 151238976-151276734 protein_coding
  ENST00000392811 SMARCD3-001 151238973-151277452 protein_coding
  ENST00000460431 SMARCD3-010 151242481-151246149 processed_transcript
  ENST00000469154 SMARCD3-004 151238974-151275252 nonsense_mediated_decay
  ENST00000470588 SMARCD3-007 151239008-151241492 retained_intron
  ENST00000472103 SMARCD3-012 151241799-151243686 retained_intron
  ENST00000472789 SMARCD3-014 151238981-151240208 retained_intron
  ENST00000472988 SMARCD3-005 151240900-151248685 retained_intron
  ENST00000477169 SMARCD3-009 151241958-151254478 processed_transcript
  ENST00000485592 SMARCD3-011 151240422-151245513 nonsense_mediated_decay
  ENST00000485610 SMARCD3-006 151241258-151248646 retained_intron
  ENST00000489503 SMARCD3-013 151241908-151242792 processed_transcript
  ENST00000491651 SMARCD3-008 151242721-151277896 protein_coding
  ENST00000496530 SMARCD3-015 151238764-151239470 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262188ENST00000356800ENST00000470588ENST00000485610ENST00000489503
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262188 N/A N/A N/A 5.095±0.00 6.717±0.00 5.350±4.50 N/A 1.493±0.00 N/A 14.349±10.51 N/A N/A N/A
ENST00000356800 10.599±0.00 14.774±0.00 30.181±18.39 13.131±0.00 15.568±0.00 5.912±3.29 14.402±0.00 N/A 15.702±0.00 9.038±3.56 42.663±33.85 8.138±0.00 32.402±20.67
ENST00000470588 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.594±0.00 N/A N/A N/A
ENST00000485610 N/A N/A N/A N/A N/A N/A 0.840±0.00 N/A N/A N/A N/A N/A N/A
ENST00000489503 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 29.884±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T1 CIL_0008T1_0001 VISTA 7:150668461-151272977
CIL_0007RX CIL_0007RX_0001 VISTA 7:151109813-151711422
CIL_0000KE CIL_0000KE_0002 CGP 7:151207837-151238827
CIL_0006DG CIL_0006DG_0002 CGP 7:151232489-151277896
CIL_0004EL CIL_0004EL_0001 CGP 7:151238764-151378449

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0002052 IDA positive regulation of neuroblast proliferation
GO:0003007 IEA heart morphogenesis
GO:0003139 IEA secondary heart field specification
GO:0003219 IEA cardiac right ventricle formation
GO:0003407 IEP neural retina development
GO:0003713 NAS transcription coactivator activity
GO:0005102 IPI receptor binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0006337 IDA nucleosome disassembly
GO:0006338 IDA chromatin remodeling
GO:0006351 IDA transcription, DNA-templated
GO:0006357 IMP regulation of transcription from RNA polymerase II promoter
GO:0008134 IPI transcription factor binding
GO:0016514 NAS SWI/SNF complex
GO:0016922 IPI ligand-dependent nuclear receptor binding
GO:0030374 IMP ligand-dependent nuclear receptor transcription coactivator activity
GO:0035257 IPI nuclear hormone receptor binding
GO:0042692 IEA muscle cell differentiation
GO:0043393 IEA regulation of protein binding
GO:0044255 TAS cellular lipid metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0071564 ISS npBAF complex
GO:0071565 ISS nBAF complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019969 smarcd3b SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3b protein_coding Danio_rerio
ENSDARG00000038786 smarcd3a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3a protein_coding Danio_rerio
ENSMUSG00000028949 Smarcd3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 protein_coding Mus_musculus

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