C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000144995 Smarcd3-002 ENSMUSG00000028949 10090 - 5:24590818-24601976 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000144995
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000144995 5.565±1.60 5.055±0.69 6.915±0.00 13.597±0.00 2.937±0.66 1.842±0.32 1.846±0.70 3.333±0.60 6.735±1.49 5.605±3.55 1.124±0.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T1 CIL_0008T1_0002 VISTA 5:24041638-24646055
CIL_0007RX CIL_0007RX_0002 VISTA 5:24430554-25031843
CIL_0006DG CIL_0006DG_0003 CGP 5:24586741-24602012
CIL_0004EL CIL_0004EL_0002 CGP 5:24590818-24710555

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000035307 CHPF2-001 protein_coding Homo_sapiens 0 1559
ENST00000262188 SMARCD3-002 protein_coding Homo_sapiens 0 1764
ENST00000356800 SMARCD3-201 protein_coding Homo_sapiens 0 1410
ENST00000392811 SMARCD3-001 protein_coding Homo_sapiens 0 1410
ENST00000460431 SMARCD3-010 processed_transcript Homo_sapiens 0 811
ENST00000469154 SMARCD3-004 nonsense_mediated_decay Homo_sapiens 0 854
ENST00000470588 SMARCD3-007 retained_intron Homo_sapiens 0 547
ENST00000472103 SMARCD3-012 retained_intron Homo_sapiens 0 424
ENST00000472789 SMARCD3-014 retained_intron Homo_sapiens 0 342
ENST00000472988 SMARCD3-005 retained_intron Homo_sapiens 0 1637
ENST00000477169 SMARCD3-009 processed_transcript Homo_sapiens 0 957
ENST00000485592 SMARCD3-011 nonsense_mediated_decay Homo_sapiens 0 1057
ENST00000485610 SMARCD3-006 retained_intron Homo_sapiens 0 1323
ENST00000489503 SMARCD3-013 processed_transcript Homo_sapiens 0 401
ENST00000491651 SMARCD3-008 protein_coding Homo_sapiens 0 645
ENST00000495645 CHPF2-002 protein_coding Homo_sapiens 0 1544
ENST00000496530 SMARCD3-015 processed_transcript Homo_sapiens 5e-23 111

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