C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000140744  |
Smarcd3-005 |
ENSMUSG00000028949 |
10090 | - |
5:24595867-24601900  |
retained_intron |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0008T1 | CIL_0008T1_0002 | VISTA | 5:24041638-24646055 |
| CIL_0007RX | CIL_0007RX_0002 | VISTA | 5:24430554-25031843 |
| CIL_0006DG | CIL_0006DG_0003 | CGP | 5:24586741-24602012 |
| CIL_0004EL | CIL_0004EL_0002 | CGP | 5:24590818-24710555 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| No GO terms available. | ||
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000262188
|
SMARCD3-002 | protein_coding | Homo_sapiens | 0 | 865 |
|
ENST00000356800
|
SMARCD3-201 | protein_coding | Homo_sapiens | 0 | 645 |
|
ENST00000392811
|
SMARCD3-001 | protein_coding | Homo_sapiens | 0 | 645 |
|
ENST00000460431
|
SMARCD3-010 | processed_transcript | Homo_sapiens | 0 | 645 |
|
ENST00000469154
|
SMARCD3-004 | nonsense_mediated_decay | Homo_sapiens | 0 | 309 |
|
ENST00000472103
|
SMARCD3-012 | retained_intron | Homo_sapiens | 0 | 257 |
|
ENST00000472988
|
SMARCD3-005 | retained_intron | Homo_sapiens | 0 | 865 |
|
ENST00000477169
|
SMARCD3-009 | processed_transcript | Homo_sapiens | 0 | 647 |
|
ENST00000485592
|
SMARCD3-011 | nonsense_mediated_decay | Homo_sapiens | 0 | 387 |
|
ENST00000485610
|
SMARCD3-006 | retained_intron | Homo_sapiens | 0 | 865 |
|
ENST00000489503
|
SMARCD3-013 | processed_transcript | Homo_sapiens | 4e-28 | 128 |
|
ENST00000491651
|
SMARCD3-008 | protein_coding | Homo_sapiens | 0 | 645 |
