C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030791 Smarcd3-001 ENSMUSG00000028949 10090 - 5:24592622-24602012 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartMuscleOvaryTestisENSMUST00000030791
Transcript ID Bladder Brain Breast Heart Muscle Ovary Testis
ENSMUST00000030791 22.029±0.06 40.234±16.63 9.895±0.00 20.838±2.77 86.429±12.84 11.777±1.92 2.573±1.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T1 CIL_0008T1_0002 VISTA 5:24041638-24646055
CIL_0007RX CIL_0007RX_0002 VISTA 5:24430554-25031843
CIL_0006DG CIL_0006DG_0003 CGP 5:24586741-24602012
CIL_0004EL CIL_0004EL_0002 CGP 5:24590818-24710555

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IEA nuclear chromatin
GO:0002052 IEA positive regulation of neuroblast proliferation
GO:0003007 IMP heart morphogenesis
GO:0003139 IMP secondary heart field specification
GO:0003219 IMP cardiac right ventricle formation
GO:0003407 IEP neural retina development
GO:0005102 IEA receptor binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006337 IEA nucleosome disassembly
GO:0006338 IEA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0008134 IEA transcription factor binding
GO:0016922 IEA ligand-dependent nuclear receptor binding
GO:0030374 IEA ligand-dependent nuclear receptor transcription coactivator activity
GO:0035257 IEA nuclear hormone receptor binding
GO:0042692 IMP muscle cell differentiation
GO:0043393 IDA regulation of protein binding
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0071564 IDA npBAF complex
GO:0071565 IDA nBAF complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262188 SMARCD3-002 protein_coding Homo_sapiens 0 2451
ENST00000356800 SMARCD3-201 protein_coding Homo_sapiens 0 2030
ENST00000392811 SMARCD3-001 protein_coding Homo_sapiens 0 2030
ENST00000460431 SMARCD3-010 processed_transcript Homo_sapiens 0 811
ENST00000469154 SMARCD3-004 nonsense_mediated_decay Homo_sapiens 0 854
ENST00000470588 SMARCD3-007 retained_intron Homo_sapiens 0 628
ENST00000472103 SMARCD3-012 retained_intron Homo_sapiens 0 424
ENST00000472789 SMARCD3-014 retained_intron Homo_sapiens 0 342
ENST00000472988 SMARCD3-005 retained_intron Homo_sapiens 0 1644
ENST00000477169 SMARCD3-009 processed_transcript Homo_sapiens 0 957
ENST00000485592 SMARCD3-011 nonsense_mediated_decay Homo_sapiens 0 1057
ENST00000485610 SMARCD3-006 retained_intron Homo_sapiens 0 1323
ENST00000489503 SMARCD3-013 processed_transcript Homo_sapiens 0 401
ENST00000491651 SMARCD3-008 protein_coding Homo_sapiens 0 645
ENST00000496530 SMARCD3-015 processed_transcript Homo_sapiens 0 200

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