C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000147857 Smarcd3-006 ENSMUSG00000028949 10090 - 5:24594695-24596849 retained_intron

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T1 CIL_0008T1_0002 VISTA 5:24041638-24646055
CIL_0007RX CIL_0007RX_0002 VISTA 5:24430554-25031843
CIL_0006DG CIL_0006DG_0003 CGP 5:24586741-24602012
CIL_0004EL CIL_0004EL_0002 CGP 5:24590818-24710555

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262188 SMARCD3-002 protein_coding Homo_sapiens 0 922
ENST00000356800 SMARCD3-201 protein_coding Homo_sapiens 0 922
ENST00000392811 SMARCD3-001 protein_coding Homo_sapiens 0 922
ENST00000460431 SMARCD3-010 processed_transcript Homo_sapiens 0 451
ENST00000469154 SMARCD3-004 nonsense_mediated_decay Homo_sapiens 0 867
ENST00000472103 SMARCD3-012 retained_intron Homo_sapiens 0 424
ENST00000472988 SMARCD3-005 retained_intron Homo_sapiens 0 941
ENST00000477169 SMARCD3-009 processed_transcript Homo_sapiens 0 595
ENST00000485592 SMARCD3-011 nonsense_mediated_decay Homo_sapiens 0 848
ENST00000485610 SMARCD3-006 retained_intron Homo_sapiens 0 673
ENST00000489503 SMARCD3-013 processed_transcript Homo_sapiens 0 401
ENST00000491651 SMARCD3-008 protein_coding Homo_sapiens 0 285

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