C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030992 Rnf4-001 ENSMUSG00000029110 10090 + 5:34336380-34353436 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000030992
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000030992 38.531±3.90 6.026±0.00 21.933±4.36 23.141±13.55 37.975±16.69 10.688±3.01 7.178±2.67 11.528±3.57 16.084±9.24 16.056±2.41 2.023±1.14 30.973±11.75 33.079±16.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00057G CIL_00057G_0002 CGP 5:34336289-34486456

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 ISS DNA binding
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 IDA:ISS nucleus
GO:0005737 IDA:ISS cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0008134 IPI transcription factor binding
GO:0008270 IEA zinc ion binding
GO:0016874 IEA ligase activity
GO:0031491 ISS nucleosome binding
GO:0032184 ISS SUMO polymer binding
GO:0043161 ISS proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0045944 IDA:ISS positive regulation of transcription from RNA polymerase II promoter
GO:0051865 ISS protein autoubiquitination
GO:0070534 ISS protein K63-linked ubiquitination
GO:0070936 ISS protein K48-linked ubiquitination
GO:0070979 ISS protein K11-linked ubiquitination
GO:0085020 ISS protein K6-linked ubiquitination
GO:0090169 ISS regulation of spindle assembly
GO:0090234 ISS regulation of kinetochore assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000314289 RNF4-001 protein_coding Homo_sapiens 0 998
ENST00000413346 RP11-423F24.3-001 processed_pseudogene Homo_sapiens 0 628
ENST00000502316 RNF4-008 protein_coding Homo_sapiens 0 721
ENST00000506706 RNF4-003 protein_coding Homo_sapiens 0 878
ENST00000507247 RNF4-020 protein_coding Homo_sapiens 0 296
ENST00000508235 RNF4-022 nonsense_mediated_decay Homo_sapiens 0 370
ENST00000509258 RNF4-002 protein_coding Homo_sapiens 0 296
ENST00000509388 RNF4-007 processed_transcript Homo_sapiens 0 477
ENST00000511600 RNF4-005 protein_coding Homo_sapiens 0 998
ENST00000511843 RNF4-011 processed_transcript Homo_sapiens 0 414
ENST00000511859 RNF4-004 protein_coding Homo_sapiens 0 431
ENST00000513284 RNF4-019 nonsense_mediated_decay Homo_sapiens 7e-22 108
ENST00000513643 RNF4-018 processed_transcript Homo_sapiens 0 289
ENST00000541204 RNF4-201 protein_coding Homo_sapiens 0 549

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