C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000182709 Rnf4-002 ENSMUSG00000029110 10090 + 5:34336289-34353436 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000182709
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000182709 17.110±3.98 28.220±3.65 21.385±3.89 11.307±5.78 12.994±5.69 23.076±8.11 5.429±2.93 13.695±3.51 22.272±4.29 17.410±2.48 3.237±1.34 32.928±12.80 27.820±10.92 13.014±4.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00057G CIL_00057G_0002 CGP 5:34336289-34486456

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 ISS DNA binding
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 IDA:ISS nucleus
GO:0005737 IDA:ISS cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0008134 IPI transcription factor binding
GO:0008270 IEA zinc ion binding
GO:0016605 IEA PML body
GO:0016874 IEA ligase activity
GO:0031491 ISS nucleosome binding
GO:0032184 ISS SUMO polymer binding
GO:0043161 ISS proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0045944 IDA:ISS positive regulation of transcription from RNA polymerase II promoter
GO:0046685 IEA response to arsenic-containing substance
GO:0051865 ISS protein autoubiquitination
GO:0070534 ISS protein K63-linked ubiquitination
GO:0070936 ISS protein K48-linked ubiquitination
GO:0070979 ISS protein K11-linked ubiquitination
GO:0085020 ISS protein K6-linked ubiquitination
GO:0090169 ISS regulation of spindle assembly
GO:0090234 ISS regulation of kinetochore assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000314289 RNF4-001 protein_coding Homo_sapiens 0 998
ENST00000413346 RP11-423F24.3-001 processed_pseudogene Homo_sapiens 0 628
ENST00000502316 RNF4-008 protein_coding Homo_sapiens 0 721
ENST00000506706 RNF4-003 protein_coding Homo_sapiens 0 878
ENST00000507247 RNF4-020 protein_coding Homo_sapiens 0 296
ENST00000508235 RNF4-022 nonsense_mediated_decay Homo_sapiens 0 370
ENST00000509258 RNF4-002 protein_coding Homo_sapiens 0 296
ENST00000509388 RNF4-007 processed_transcript Homo_sapiens 0 477
ENST00000511600 RNF4-005 protein_coding Homo_sapiens 0 998
ENST00000511843 RNF4-011 processed_transcript Homo_sapiens 0 414
ENST00000511859 RNF4-004 protein_coding Homo_sapiens 0 431
ENST00000513284 RNF4-019 nonsense_mediated_decay Homo_sapiens 7e-22 108
ENST00000513643 RNF4-018 processed_transcript Homo_sapiens 0 289
ENST00000541204 RNF4-201 protein_coding Homo_sapiens 0 549

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