C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 35, member F6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000062962 Slc35f6-001 ENSMUSG00000029175 10090 + 5:30647933-30659731 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000062962
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000062962 7.002±0.60 15.464±3.98 9.330±0.24 3.650±0.55 7.932±3.17 12.210±1.64 11.491±1.48 6.400±1.14 3.958±1.24 9.622±0.62 3.227±0.43 11.759±2.69 11.010±7.63 3.155±1.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WF CIL_0007WF_0002 VISTA 5:30314016-30916922
CIL_00004N CIL_00004N_0002 CGP 5:30588170-30659731
CIL_00004O CIL_00004O_0002 CGP 5:30647933-30674827

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005739 ISS mitochondrion
GO:0005764 IDA lysosome
GO:0005765 ISS lysosomal membrane
GO:0006810 IEA transport
GO:0008284 ISS positive regulation of cell proliferation
GO:0016021 IEA integral component of membrane
GO:0070062 IEA extracellular vesicular exosome
GO:1901029 ISS negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000344420 SLC35F6-001 protein_coding Homo_sapiens 0 1186
ENST00000414029 SLC35F6-003 nonsense_mediated_decay Homo_sapiens 0 819
ENST00000429494 SLC35F6-002 nonsense_mediated_decay Homo_sapiens 0 1002

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