C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 35, member F6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000124474 Slc35f6-003 ENSMUSG00000029175 10090 + 5:30648012-30658191 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000124474
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000124474 7.303±2.20 8.431±0.55 2.816±0.12 8.754±3.81 8.780±2.12 8.706±1.90 5.939±0.54 2.075±0.50 10.123±2.53 1.816±0.13 11.625±0.00 9.940±0.94 2.844±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WF CIL_0007WF_0002 VISTA 5:30314016-30916922
CIL_00004N CIL_00004N_0002 CGP 5:30588170-30659731
CIL_00004O CIL_00004O_0002 CGP 5:30647933-30674827

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005764 IDA lysosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000344420 SLC35F6-001 protein_coding Homo_sapiens 0 819
ENST00000414029 SLC35F6-003 nonsense_mediated_decay Homo_sapiens 0 1002
ENST00000429494 SLC35F6-002 nonsense_mediated_decay Homo_sapiens 0 819

Loading