C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 35, member F6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000143867 Slc35f6-002 ENSMUSG00000029175 10090 + 5:30647967-30658191 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000143867
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000143867 12.271±5.55 17.119±5.58 9.783±1.28 7.034±0.24 16.790±4.35 21.404±8.13 19.598±2.35 6.332±2.14 5.172±1.41 14.451±4.24 1.770±0.66 33.116±5.02 19.921±15.72 5.472±1.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WF CIL_0007WF_0002 VISTA 5:30314016-30916922
CIL_00004N CIL_00004N_0002 CGP 5:30588170-30659731
CIL_00004O CIL_00004O_0002 CGP 5:30647933-30674827

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005764 IDA lysosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000344420 SLC35F6-001 protein_coding Homo_sapiens 0 1002
ENST00000414029 SLC35F6-003 nonsense_mediated_decay Homo_sapiens 0 819
ENST00000429494 SLC35F6-002 nonsense_mediated_decay Homo_sapiens 0 1112

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