C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 30 (zinc transporter), member 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113676 Slc30a9-002 ENSMUSG00000029221 10090 + 5:67306955-67355336 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000113676
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000113676 15.014±2.90 38.061±24.24 14.013±2.00 26.830±10.66 16.943±5.99 8.614±4.62 22.896±3.77 33.981±4.05 13.476±3.33 23.921±4.93 9.048±6.08 24.491±9.92 13.644±3.12 13.261±2.69

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OI CIL_0007OI_0002 UCNEbase 5:67098377-67633824
CIL_0007YP CIL_0007YP_0002 VISTA 5:67123705-67724669
CIL_0002Z2 CIL_0002Z2_0002 CGP 5:67306955-67427799

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003682 IDA chromatin binding
GO:0005634 ISO nucleus
GO:0005737 ISO cytoplasm
GO:0008324 IEA cation transmembrane transporter activity
GO:0016021 IEA integral component of membrane
GO:0016922 IPI ligand-dependent nuclear receptor binding
GO:0030374 IGI ligand-dependent nuclear receptor transcription coactivator activity
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264451 SLC30A9-001 protein_coding Homo_sapiens 0 1757
ENST00000505523 SLC30A9-006 retained_intron Homo_sapiens 0 580
ENST00000509683 SLC30A9-005 retained_intron Homo_sapiens 0 357
ENST00000513699 SLC30A9-002 nonsense_mediated_decay Homo_sapiens 0 1759

Loading