C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 30 (zinc transporter), member 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000162372 Slc30a9-001 ENSMUSG00000029221 10090 + 5:67306955-67358565 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000162372
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000162372 3.770±0.50 5.276±0.38 4.685±0.42 6.845±0.71 3.568±0.57 5.441±0.82 5.436±0.86 12.206±1.02 4.206±0.99 5.038±0.81 3.043±1.10 9.404±2.63 2.900±1.27 2.272±0.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OI CIL_0007OI_0002 UCNEbase 5:67098377-67633824
CIL_0007YP CIL_0007YP_0002 VISTA 5:67123705-67724669
CIL_0002Z2 CIL_0002Z2_0002 CGP 5:67306955-67427799

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003682 IDA chromatin binding
GO:0005634 ISO nucleus
GO:0005737 ISO cytoplasm
GO:0005856 IEA cytoskeleton
GO:0006351 IEA transcription, DNA-templated
GO:0006829 IEA zinc ion transport
GO:0008324 IEA cation transmembrane transporter activity
GO:0016021 IEA integral component of membrane
GO:0016922 IPI ligand-dependent nuclear receptor binding
GO:0030374 IGI ligand-dependent nuclear receptor transcription coactivator activity
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264451 SLC30A9-001 protein_coding Homo_sapiens 0 2017
ENST00000505523 SLC30A9-006 retained_intron Homo_sapiens 0 580
ENST00000509683 SLC30A9-005 retained_intron Homo_sapiens 0 357
ENST00000510460 SLC30A9-004 retained_intron Homo_sapiens 0 388
ENST00000513699 SLC30A9-002 nonsense_mediated_decay Homo_sapiens 0 1757

Loading