C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ligand of numb-protein X 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029228 Lnx1 10090 - 5:74592446-74702911 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000039744 Lnx1-001 74592446-74677872 protein_coding
  ENSMUST00000087161 Lnx1-201 74592447-74685787 protein_coding
  ENSMUST00000113531 Lnx1-202 74592447-74677872 protein_coding
  ENSMUST00000117388 Lnx1-006 74597104-74702911 protein_coding
  ENSMUST00000117525 Lnx1-004 74597104-74677792 protein_coding
  ENSMUST00000121690 Lnx1-003 74597106-74677872 protein_coding
  ENSMUST00000127396 Lnx1-002 74592681-74677855 nonsense_mediated_decay
  ENSMUST00000140084 Lnx1-009 74606037-74623521 protein_coding
  ENSMUST00000153543 Lnx1-008 74623518-74677855 protein_coding
  ENSMUST00000154928 Lnx1-007 74596944-74685865 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000087161ENSMUST00000117388ENSMUST00000117525ENSMUST00000121690ENSMUST00000154928
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000087161 N/A 1.193±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000117388 5.375±2.78 N/A 4.384±1.01 3.265±0.56 9.496±3.12 3.135±1.61 3.736±0.67 0.984±0.00 2.553±0.22 1.794±0.01 2.925±0.50 4.904±0.22
ENSMUST00000117525 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.574±0.00 N/A
ENSMUST00000121690 N/A N/A N/A N/A N/A 3.972±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000154928 N/A N/A N/A 3.344±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008RT CIL_0008RT_0002 VISTA 5:74061294-74663523
CIL_0007V9 CIL_0007V9_0002 VISTA 5:74131979-74735797
CIL_0001CS CIL_0001CS_0002 CGP 5:74204816-74598790
CIL_0001CL CIL_0001CL_0002 CGP 5:74535449-74702911
CIL_0001CM CIL_0001CM_0002 CGP 5:74592446-75044774

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0006511 IDA ubiquitin-dependent protein catabolic process
GO:0008270 IEA zinc ion binding
GO:0016874 IEA ligase activity
GO:0030165 IDA PDZ domain binding
GO:0042787 IDA protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0051260 IDA protein homooligomerization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043323 lnx1 ligand of numb-protein X 1 protein_coding Danio_rerio
ENSG00000072201 LNX1 ligand of numb-protein X 1, E3 ubiquitin protein ligase protein_coding Homo_sapiens

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