C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ligand of numb-protein X 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117388 Lnx1-006 ENSMUSG00000029228 10090 - 5:74597104-74702911 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000117388
Transcript ID Adipose Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000117388 5.375±2.78 4.384±1.01 3.265±0.56 9.496±3.12 3.135±1.61 3.736±0.67 0.984±0.00 2.553±0.22 1.794±0.01 2.925±0.50 4.904±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008RT CIL_0008RT_0002 VISTA 5:74061294-74663523
CIL_0007V9 CIL_0007V9_0002 VISTA 5:74131979-74735797
CIL_0001CS CIL_0001CS_0002 CGP 5:74204816-74598790
CIL_0001CL CIL_0001CL_0002 CGP 5:74535449-74702911
CIL_0001CM CIL_0001CM_0002 CGP 5:74592446-75044774

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0006511 IDA ubiquitin-dependent protein catabolic process
GO:0008270 IEA zinc ion binding
GO:0016874 IEA ligase activity
GO:0030165 IDA PDZ domain binding
GO:0042787 IDA protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0051260 IDA protein homooligomerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263925 LNX1-001 protein_coding Homo_sapiens 0 2276
ENST00000306888 LNX1-002 protein_coding Homo_sapiens 0 1901
ENST00000510143 LNX1-007 protein_coding Homo_sapiens 0 291
ENST00000511398 LNX1-010 retained_intron Homo_sapiens 0 472
ENST00000512247 LNX1-003 protein_coding Homo_sapiens 0 287
ENST00000513421 LNX1-006 protein_coding Homo_sapiens 0 379

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