C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: bromodomain, testis-specific
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031215 Brdt-001 ENSMUSG00000029279 10090 + 5:107331159-107387058 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031215
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031215 0.360±0.15 1.195±0.74 0.891±0.67 0.476±0.29 0.700±0.25 0.087±0.02 0.173±0.08 0.098±0.09 0.517±0.00 0.159±0.02 1.139±0.77 0.115±0.08 11.727±3.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DI CIL_0008DI_0002 VISTA 5:106921760-107524214
CIL_0008YV CIL_0008YV_0002 VISTA 5:106950899-107552442
CIL_0005ZR CIL_0005ZR_0002 CGP 5:107106570-107387058
CIL_0005ZS CIL_0005ZS_0002 CGP 5:107331159-107430035

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001207 IMP histone displacement
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006338 IDA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006397 IEA mRNA processing
GO:0007140 IMP male meiosis
GO:0007141 IMP male meiosis I
GO:0007283 IMP spermatogenesis
GO:0008380 IEA RNA splicing
GO:0030154 IEA cell differentiation
GO:0042393 IDA histone binding
GO:0043484 IMP regulation of RNA splicing
GO:0051039 IMP positive regulation of transcription during meiosis
GO:0070577 IMP lysine-acetylated histone binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355011 BRDT-008 protein_coding Homo_sapiens 0.000000001 68
ENST00000362005 BRDT-001 protein_coding Homo_sapiens 0 1336
ENST00000370389 BRDT-002 protein_coding Homo_sapiens 0 1182
ENST00000394530 BRDT-201 protein_coding Homo_sapiens 0 1014
ENST00000399546 BRDT-202 protein_coding Homo_sapiens 0 1297
ENST00000402388 BRDT-006 protein_coding Homo_sapiens 0 1336
ENST00000423434 BRDT-004 protein_coding Homo_sapiens 0 521
ENST00000426141 BRDT-005 protein_coding Homo_sapiens 0 1096
ENST00000427104 BRDT-012 protein_coding Homo_sapiens 0 494
ENST00000440509 BRDT-003 protein_coding Homo_sapiens 0 545
ENST00000448194 BRDT-013 protein_coding Homo_sapiens 0 494
ENST00000449584 BRDT-007 protein_coding Homo_sapiens 2e-28 130
ENST00000450792 BRDT-016 protein_coding Homo_sapiens 0 274
ENST00000457265 BRDT-017 protein_coding Homo_sapiens 1e-24 117
ENST00000548992 BRDT-019 protein_coding Homo_sapiens 0 292
ENST00000552654 BRDT-020 protein_coding Homo_sapiens 0 363

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