C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: shroom family member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113051 Shroom3-005 ENSMUSG00000029381 10090 + 5:92897993-92965308 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000113051
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000113051 1.913±0.24 1.118±0.25 7.892±2.06 1.437±0.13 2.598±1.12 27.840±2.53 1.546±0.41 0.767±0.12 0.260±0.11 5.569±0.60 0.051±0.02 3.382±0.99 2.731±1.22 3.021±0.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VL CIL_0008VL_0002 VISTA 5:92327753-92928377
CIL_00071O CIL_00071O_0002 CGP 5:92607954-92965318
CIL_00069W CIL_00069W_0002 CGP 5:92683435-93045022

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000902 ISS cell morphogenesis
GO:0001843 IMP neural tube closure
GO:0002066 IDA columnar/cuboidal epithelial cell development
GO:0003779 IDA actin binding
GO:0005737 IEA cytoplasm
GO:0005856 IDA cytoskeleton
GO:0005874 IEA microtubule
GO:0005912 IDA adherens junction
GO:0007389 IMP pattern specification process
GO:0008360 IDA regulation of cell shape
GO:0016324 IDA apical plasma membrane
GO:0030036 IGI actin cytoskeleton organization
GO:0043296 IDA apical junction complex
GO:0043482 ISS cellular pigment accumulation
GO:0045176 ISS apical protein localization
GO:0045177 IDA apical part of cell

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296043 SHROOM3-001 protein_coding Homo_sapiens 0 2196
ENST00000473602 SHROOM3-013 processed_transcript Homo_sapiens 0 496
ENST00000481002 SHROOM3-008 processed_transcript Homo_sapiens 0 340
ENST00000486758 SHROOM3-004 retained_intron Homo_sapiens 0 2109

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