C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: shroom family member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113054 Shroom3-003 ENSMUSG00000029381 10090 + 5:92809378-92965318 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000113054
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000113054 0.945±0.29 2.125±0.26 0.633±0.00 1.000±0.39 13.258±2.44 3.853±1.22 4.806±0.68 0.193±0.10 15.001±2.19 9.228±1.95 1.309±0.30 3.934±0.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VL CIL_0008VL_0002 VISTA 5:92327753-92928377
CIL_00071O CIL_00071O_0002 CGP 5:92607954-92965318
CIL_00069W CIL_00069W_0002 CGP 5:92683435-93045022

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000902 ISS cell morphogenesis
GO:0001843 IMP neural tube closure
GO:0002066 IDA columnar/cuboidal epithelial cell development
GO:0003779 IDA actin binding
GO:0005737 IEA cytoplasm
GO:0005856 IDA cytoskeleton
GO:0005874 IEA microtubule
GO:0005912 IDA adherens junction
GO:0007389 IMP pattern specification process
GO:0008360 IDA regulation of cell shape
GO:0016324 IDA apical plasma membrane
GO:0030036 IGI actin cytoskeleton organization
GO:0043296 IDA apical junction complex
GO:0043482 ISS cellular pigment accumulation
GO:0045176 ISS apical protein localization
GO:0045177 IDA apical part of cell

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296043 SHROOM3-001 protein_coding Homo_sapiens 0 2198
ENST00000473602 SHROOM3-013 processed_transcript Homo_sapiens 0 496
ENST00000481002 SHROOM3-008 processed_transcript Homo_sapiens 0 379
ENST00000486758 SHROOM3-004 retained_intron Homo_sapiens 0 2098

Loading