C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 15, member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000153832 Slc15a4-002 ENSMUSG00000029416 10090 - 5:127595667-127617418 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000153832
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000153832 3.945±0.51 5.076±2.42 1.696±0.00 3.023±1.91 7.428±3.21 5.699±1.12 2.123±0.80 2.598±1.07 3.329±1.65 5.779±1.05 1.271±0.38 3.873±2.16 0.939±0.07 4.037±0.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00038Z CIL_00038Z_0002 CGP 5:127241808-127632897
CIL_00006M CIL_00006M_0003 CGP 5:127595664-127708754

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0006857 IEA oligopeptide transport
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000266771 SLC15A4-001 protein_coding Homo_sapiens 0 780
ENST00000366292 SLC15A4-004 retained_intron Homo_sapiens 0 422
ENST00000376740 SLC15A4-007 nonsense_mediated_decay Homo_sapiens 0 798
ENST00000376744 SLC15A4-002 nonsense_mediated_decay Homo_sapiens 0 651
ENST00000539703 SLC15A4-006 processed_transcript Homo_sapiens 0 407
ENST00000544112 SLC15A4-005 retained_intron Homo_sapiens 0 651
ENST00000545031 SLC15A4-008 retained_intron Homo_sapiens 0 348
ENST00000614634 SLC15A4-201 protein_coding Homo_sapiens 0 643

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