C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin related protein 2/3 complex, subunit 1B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000085679 Arpc1b-001 ENSMUSG00000029622 10090 + 5:145114215-145129699 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000085679
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000085679 48.368±4.28 15.615±0.00 6.356±0.21 42.771±15.84 53.514±0.00 2.836±0.83 8.872±3.35 14.639±4.97 29.975±16.67 3.029±0.69 27.796±15.71 27.866±4.02 6.311±1.92

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005L5 CIL_0005L5_0003 CGP 5:145083830-145130705
CIL_0004TJ CIL_0004TJ_0002 CGP 5:145114215-145140238

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005737 IEA cytoplasm
GO:0005885 TAS Arp2/3 protein complex
GO:0005925 IEA focal adhesion
GO:0030833 IEA regulation of actin filament polymerization
GO:0051015 IEA actin filament binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000033713 arpc1b-001 protein_coding Danio_rerio 0 486
ENST00000252725 ARPC1B-001 protein_coding Homo_sapiens 0 1537
ENST00000350498 PDAP1-001 protein_coding Homo_sapiens 0.0000000001 73
ENST00000414376 ARPC1B-008 protein_coding Homo_sapiens 0 455
ENST00000417330 ARPC1B-014 protein_coding Homo_sapiens 0 571
ENST00000418347 ARPC1B-013 protein_coding Homo_sapiens 0 383
ENST00000427217 ARPC1B-016 protein_coding Homo_sapiens 0 582
ENST00000429246 ARPC1B-009 protein_coding Homo_sapiens 2e-21 106
ENST00000431816 ARPC1B-015 protein_coding Homo_sapiens 0 582
ENST00000432343 ARPC1B-024 nonsense_mediated_decay Homo_sapiens 0 571
ENST00000441989 ARPC1A-003 nonsense_mediated_decay Homo_sapiens 0 440
ENST00000443222 ARPC1B-007 protein_coding Homo_sapiens 0 486
ENST00000445924 ARPC1B-018 nonsense_mediated_decay Homo_sapiens 0 734
ENST00000451682 ARPC1B-003 protein_coding Homo_sapiens 0 1434
ENST00000455009 ARPC1B-012 protein_coding Homo_sapiens 0 560
ENST00000458033 ARPC1B-017 protein_coding Homo_sapiens 0 582
ENST00000463078 ARPC1B-022 processed_transcript Homo_sapiens 0.000000000002 77
ENST00000474880 ARPC1B-020 processed_transcript Homo_sapiens 0 571
ENST00000481997 ARPC1B-005 retained_intron Homo_sapiens 0 739
ENST00000484375 ARPC1B-025 retained_intron Homo_sapiens 0 928
ENST00000484600 ARPC1B-011 retained_intron Homo_sapiens 0 750
ENST00000491294 ARPC1B-006 retained_intron Homo_sapiens 0 396
ENST00000493403 ARPC1B-019 processed_transcript Homo_sapiens 0 440

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