C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SV2 related protein homolog (rat)-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000096040 Svopl-001 ENSMUSG00000029830 10090 - 6:37983739-38046996 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000096040
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000096040 0.284±0.00 0.114±0.04 0.348±0.04 0.019±0.00 0.210±0.10 0.138±0.04 0.180±0.00 2.558±0.62 0.019±0.00 0.135±0.02 0.058±0.02 0.369±0.22 0.068±0.06 0.103±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002Q3 CIL_0002Q3_0002 CGP 6:37870811-38046996
CIL_0002QA CIL_0002QA_0002 CGP 6:37983739-38124586

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0016021 IEA integral component of membrane
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000288513 SVOPL-001 protein_coding Homo_sapiens 0 1192
ENST00000419765 SVOPL-005 protein_coding Homo_sapiens 0 1707
ENST00000421622 SVOPL-004 protein_coding Homo_sapiens 0 1101
ENST00000436657 SVOPL-201 protein_coding Homo_sapiens 0 1192
ENST00000441685 SVOPL-002 nonsense_mediated_decay Homo_sapiens 0 1179
ENST00000478865 SVOPL-007 retained_intron Homo_sapiens 0 387

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