C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SV2 related protein homolog (rat)-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000172585 Svopl-002 ENSMUSG00000029830 10090 - 6:37984512-38031089 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000172585
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000172585 0.854±0.40 0.388±0.07 0.186±0.00 0.812±0.34 1.216±0.71 0.157±0.06 3.692±1.21 0.036±0.03 0.159±0.08 0.073±0.06 0.450±0.25 0.077±0.03 0.071±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002Q3 CIL_0002Q3_0002 CGP 6:37870811-38046996
CIL_0002QA CIL_0002QA_0002 CGP 6:37983739-38124586

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000288513 SVOPL-001 protein_coding Homo_sapiens 0 1280
ENST00000419765 SVOPL-005 protein_coding Homo_sapiens 0 1179
ENST00000421622 SVOPL-004 protein_coding Homo_sapiens 0 1088
ENST00000436657 SVOPL-201 protein_coding Homo_sapiens 0 1280
ENST00000441685 SVOPL-002 nonsense_mediated_decay Homo_sapiens 0 1046
ENST00000478865 SVOPL-007 retained_intron Homo_sapiens 0 374

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