C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SV2 related protein homolog (rat)-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000040486 Svopl-004 ENSMUSG00000029830 10090 - 6:38015273-38046996 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040486
Transcript ID Adipose Bladder Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040486 0.107±0.00 0.056±0.00 0.057±0.02 0.534±0.08 0.008±0.00 0.065±0.03 0.022±0.00 0.156±0.14 0.025±0.02 0.009±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002Q3 CIL_0002Q3_0002 CGP 6:37870811-38046996
CIL_0002QA CIL_0002QA_0002 CGP 6:37983739-38124586

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000288513 SVOPL-001 protein_coding Homo_sapiens 0 676
ENST00000419765 SVOPL-005 protein_coding Homo_sapiens 0 1192
ENST00000436657 SVOPL-201 protein_coding Homo_sapiens 0 676
ENST00000441685 SVOPL-002 nonsense_mediated_decay Homo_sapiens 0 809

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