C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif-containing 24
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120428 Trim24-002 ENSMUSG00000029833 10090 + 6:37870811-37966296 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000120428
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000120428 3.472±0.87 1.382±0.27 3.279±0.04 8.804±2.12 3.878±0.55 3.462±0.90 1.165±0.00 3.825±1.29 4.178±1.27 2.206±0.18 3.536±0.79 5.510±2.94 3.073±0.96 13.432±3.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002Q4 CIL_0002Q4_0002 CGP 6:37530173-37966296
CIL_0002Q3 CIL_0002Q3_0002 CGP 6:37870811-38046996

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002039 IPI p53 binding
GO:0003682 IDA chromatin binding
GO:0003713 ISS transcription coactivator activity
GO:0004672 IDA protein kinase activity
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005719 IDA nuclear euchromatin
GO:0005726 IDA perichromatin fibrils
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006468 IDA protein phosphorylation
GO:0008270 ISS zinc ion binding
GO:0008285 IGI negative regulation of cell proliferation
GO:0010628 IGI positive regulation of gene expression
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0016922 IDA ligand-dependent nuclear receptor binding
GO:0030163 IMP protein catabolic process
GO:0031647 IMP regulation of protein stability
GO:0034056 ISS estrogen response element binding
GO:0043565 IDA sequence-specific DNA binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045893 IGI positive regulation of transcription, DNA-templated
GO:0046777 IDA protein autophosphorylation
GO:0055074 IMP calcium ion homeostasis
GO:0070562 IMP regulation of vitamin D receptor signaling pathway
GO:0070577 ISS lysine-acetylated histone binding
GO:0071391 ISS cellular response to estrogen stimulus
GO:1901796 IGI regulation of signal transduction by p53 class mediator

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000343526 TRIM24-001 protein_coding Homo_sapiens 0 1964
ENST00000415680 TRIM24-007 protein_coding Homo_sapiens 0 3825
ENST00000464210 TRIM24-010 processed_transcript Homo_sapiens 0 486
ENST00000485318 TRIM24-011 processed_transcript Homo_sapiens 7e-32 141
ENST00000493595 TRIM24-012 processed_transcript Homo_sapiens 0 497
ENST00000497516 TRIM24-014 processed_transcript Homo_sapiens 0 1646
ENST00000620194 TRIM24-201 protein_coding Homo_sapiens 0 3725

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