C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cellular nucleic acid binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000032138 Cnbp-201 ENSMUSG00000030057 10090 - 6:87842615-87851106 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000032138
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000032138 20.000±1.56 16.122±0.20 18.954±0.00 8.851±0.00 10.590±0.40 12.014±0.00 10.827±1.00 14.923±4.01 15.422±1.71 20.852±8.19 14.394±5.59 10.232±3.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00007J CIL_00007J_0003 CGP 6:87818447-87851106
CIL_000312 CIL_000312_0002 CGP 6:87842615-87913595

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003697 IEA single-stranded DNA binding
GO:0003727 IEA single-stranded RNA binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005783 IDA endoplasmic reticulum
GO:0005829 IDA cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0008284 IDA positive regulation of cell proliferation
GO:0044822 IEA poly(A) RNA binding
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000104520 cnbpb-001 protein_coding Danio_rerio 0 492
ENSDART00000154888 cnbpb-002 protein_coding Danio_rerio 0 320
ENST00000422453 CNBP-001 protein_coding Homo_sapiens 0 2368
ENST00000441626 CNBP-009 protein_coding Homo_sapiens 0 1530
ENST00000446936 CNBP-011 protein_coding Homo_sapiens 0 2200
ENST00000451728 CNBP-010 protein_coding Homo_sapiens 0 2344
ENST00000500450 CNBP-004 protein_coding Homo_sapiens 0 1849
ENST00000502372 CNBP-006 retained_intron Homo_sapiens 0 902
ENST00000502976 CNBP-002 protein_coding Homo_sapiens 0 2211
ENST00000504813 CNBP-003 protein_coding Homo_sapiens 0 1849
ENST00000507573 CNBP-005 retained_intron Homo_sapiens 0 313
ENST00000512338 CNBP-008 protein_coding Homo_sapiens 0 375

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