C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: contactin 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000162872 Cntn6-004 ENSMUSG00000030092 10090 + 6:104493248-104863401 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000162872
Transcript ID Adipose Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000162872 0.013±0.00 0.966±0.61 0.025±0.00 0.070±0.03 0.012±0.00 0.017±0.00 0.064±0.00 0.011±0.01 0.065±0.04 0.019±0.01 1.555±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00050I CIL_00050I_0002 CGP 6:103510876-104863406
CIL_00050H CIL_00050H_0002 CGP 6:104492790-106699310

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005886 TAS plasma membrane
GO:0007155 IEA cell adhesion
GO:0007219 IEA Notch signaling pathway
GO:0031225 IEA anchored component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000350110 CNTN6-004 protein_coding Homo_sapiens 0 3642
ENST00000394261 CNTN6-003 nonsense_mediated_decay Homo_sapiens 0 809
ENST00000397479 CNTN6-002 nonsense_mediated_decay Homo_sapiens 0 3356
ENST00000446702 CNTN6-001 protein_coding Homo_sapiens 0 3648
ENST00000485257 CNTN6-006 retained_intron Homo_sapiens 0 414

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