C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030435 U2af2 10090 + 7:5062143-5079945 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000005041 U2af2-201 5062143-5079945 protein_coding
  ENSMUST00000165399 U2af2-202 5067228-5079932 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000005041ENSMUST00000165399
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000005041 32.178±15.43 30.357±7.97 36.356±8.09 77.645±45.29 33.874±10.34 27.113±13.04 13.235±7.42 26.709±14.09 48.158±34.47 46.335±4.22 5.237±0.82 42.255±16.73 61.455±19.35 19.414±7.68
ENSMUST00000165399 N/A 13.080±0.00 N/A 41.666±0.00 18.984±7.01 20.024±0.06 10.164±0.00 15.058±0.42 15.860±7.41 20.655±0.43 N/A 30.033±9.96 39.297±24.14 11.505±2.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006S5 CIL_0006S5_0002 CGP 7:5056152-5079945
CIL_0003U5 CIL_0003U5_0002 CGP 7:5062143-5098178

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000974 ISS Prp19 complex
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008380 IDA RNA splicing
GO:0016607 ISO nuclear speck
GO:0019899 IEA enzyme binding
GO:0033120 ISS positive regulation of RNA splicing
GO:0044822 IEA poly(A) RNA binding
GO:0048025 ISS negative regulation of mRNA splicing, via spliceosome
GO:0070742 IPI C2H2 zinc finger domain binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011740 u2af2b U2 small nuclear RNA auxiliary factor 2b protein_coding Danio_rerio
ENSDARG00000012505 u2af2a U2 small nuclear RNA auxiliary factor 2a protein_coding Danio_rerio
ENSG00000063244 U2AF2 U2 small nuclear RNA auxiliary factor 2 protein_coding Homo_sapiens

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