C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000005041 U2af2-201 ENSMUSG00000030435 10090 + 7:5062143-5079945 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000005041
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000005041 32.178±15.43 30.357±7.97 36.356±8.09 77.645±45.29 33.874±10.34 27.113±13.04 13.235±7.42 26.709±14.09 48.158±34.47 46.335±4.22 5.237±0.82 42.255±16.73 61.455±19.35 19.414±7.68

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006S5 CIL_0006S5_0002 CGP 7:5056152-5079945
CIL_0003U5 CIL_0003U5_0002 CGP 7:5062143-5098178

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000974 ISS Prp19 complex
GO:0005515 IPI protein binding
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008380 IDA RNA splicing
GO:0016607 ISO nuclear speck
GO:0019899 IEA enzyme binding
GO:0033120 ISS positive regulation of RNA splicing
GO:0044822 IEA poly(A) RNA binding
GO:0048025 ISS negative regulation of mRNA splicing, via spliceosome
GO:0070742 IPI C2H2 zinc finger domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000008535 u2af2a-001 protein_coding Danio_rerio 0 821
ENSDART00000124875 u2af2a-201 protein_coding Danio_rerio 0 767
ENST00000308924 U2AF2-002 protein_coding Homo_sapiens 0 2215
ENST00000450554 U2AF2-001 protein_coding Homo_sapiens 0 2662
ENST00000587196 U2AF2-003 nonsense_mediated_decay Homo_sapiens 0 590
ENST00000587275 U2AF2-009 retained_intron Homo_sapiens 0 311
ENST00000588850 U2AF2-010 retained_intron Homo_sapiens 0 715
ENST00000590551 U2AF2-008 protein_coding Homo_sapiens 0 1382
ENST00000592867 U2AF2-005 retained_intron Homo_sapiens 0 217
ENST00000592874 U2AF2-007 nonsense_mediated_decay Homo_sapiens 0 601

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