C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000165399 U2af2-202 ENSMUSG00000030435 10090 + 7:5067228-5079932 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000165399
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000165399 13.080±0.00 41.666±0.00 18.984±7.01 20.024±0.06 10.164±0.00 15.058±0.42 15.860±7.41 20.655±0.43 30.033±9.96 39.297±24.14 11.505±2.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006S5 CIL_0006S5_0002 CGP 7:5056152-5079945
CIL_0003U5 CIL_0003U5_0002 CGP 7:5062143-5098178

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 IEA RNA binding
GO:0006397 IEA mRNA processing
GO:0016607 ISO nuclear speck

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000008535 u2af2a-001 protein_coding Danio_rerio 0 660
ENSDART00000124875 u2af2a-201 protein_coding Danio_rerio 0 608
ENST00000308924 U2AF2-002 protein_coding Homo_sapiens 0 1378
ENST00000450554 U2AF2-001 protein_coding Homo_sapiens 0 1434
ENST00000587196 U2AF2-003 nonsense_mediated_decay Homo_sapiens 0 532
ENST00000587275 U2AF2-009 retained_intron Homo_sapiens 0 311
ENST00000588850 U2AF2-010 retained_intron Homo_sapiens 0 418
ENST00000590551 U2AF2-008 protein_coding Homo_sapiens 0 1434
ENST00000592874 U2AF2-007 nonsense_mediated_decay Homo_sapiens 0 1072

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