C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: leucine rich repeat containing 28
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030556 Lrrc28 10090 - 7:67513411-67645268 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000032775 Lrrc28-002 67594399-67645207 protein_coding
  ENSMUST00000053950 Lrrc28-001 67513411-67645231 protein_coding
  ENSMUST00000185818 Lrrc28-012 67529711-67535397 processed_transcript
  ENSMUST00000187953 Lrrc28-003 67513412-67641306 nonsense_mediated_decay
  ENSMUST00000188971 Lrrc28-010 67531756-67619976 processed_transcript
  ENSMUST00000189836 Lrrc28-011 67618062-67645268 protein_coding
  ENSMUST00000190115 Lrrc28-006 67514406-67579750 processed_transcript
  ENSMUST00000190276 Lrrc28-007 67545376-67645204 protein_coding
  ENSMUST00000190770 Lrrc28-008 67531655-67620027 processed_transcript
  ENSMUST00000191035 Lrrc28-005 67529586-67641342 nonsense_mediated_decay
  ENSMUST00000191062 Lrrc28-013 67531746-67607262 processed_transcript
  ENSMUST00000191386 Lrrc28-009 67595401-67619998 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032775ENSMUST00000053950ENSMUST00000187953ENSMUST00000188971ENSMUST00000190115ENSMUST00000190276ENSMUST00000191035
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032775 N/A N/A N/A N/A N/A N/A N/A N/A 0.642±0.07 N/A N/A 0.646±0.00 N/A N/A
ENSMUST00000053950 2.245±0.31 0.952±0.12 4.091±0.66 4.177±0.50 1.733±0.56 1.164±0.36 0.972±0.42 3.550±0.35 2.621±0.96 2.042±0.40 1.410±0.53 1.799±0.91 3.312±2.09 1.356±0.00
ENSMUST00000187953 0.857±0.00 N/A N/A 1.602±0.58 1.816±0.00 0.631±0.00 0.614±0.00 N/A N/A N/A 1.280±0.00 1.124±0.09 N/A N/A
ENSMUST00000188971 11.395±1.94 10.924±3.72 N/A 10.703±1.14 12.035±2.58 5.498±1.47 6.137±1.50 17.028±2.12 13.651±5.85 9.753±0.99 N/A 12.927±4.00 N/A 149.138±18.93
ENSMUST00000190115 2.260±0.78 3.589±1.00 N/A 2.673±0.67 3.086±0.66 1.672±0.24 1.326±0.38 3.701±1.16 2.677±1.37 2.945±0.34 N/A 4.989±1.17 2.576±2.39 45.681±24.65
ENSMUST00000190276 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.831±0.04 N/A N/A N/A
ENSMUST00000191035 2.415±0.29 N/A N/A N/A 4.643±0.00 1.298±0.23 1.388±0.00 N/A 3.377±0.53 N/A 2.919±0.52 2.409±0.81 1.836±0.70 50.489±15.21

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057477 lrrc28 leucine rich repeat containing 28 protein_coding Danio_rerio
ENSG00000168904 LRRC28 leucine rich repeat containing 28 protein_coding Homo_sapiens

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