C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine rich repeat containing 28
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000190115 Lrrc28-006 ENSMUSG00000030556 10090 - 7:67514406-67579750 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000190115
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000190115 2.260±0.78 3.589±1.00 2.673±0.67 3.086±0.66 1.672±0.24 1.326±0.38 3.701±1.16 2.677±1.37 2.945±0.34 4.989±1.17 2.576±2.39 45.681±24.65

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000301981 LRRC28-001 protein_coding Homo_sapiens 0 833
ENST00000331450 LRRC28-002 protein_coding Homo_sapiens 3e-27 126
ENST00000447360 LRRC28-003 protein_coding Homo_sapiens 0 499
ENST00000558172 LRRC28-010 protein_coding Homo_sapiens 0 346
ENST00000558248 LRRC28-013 retained_intron Homo_sapiens 0 412
ENST00000558471 LRRC28-009 nonsense_mediated_decay Homo_sapiens 0 499
ENST00000558771 LRRC28-016 processed_transcript Homo_sapiens 0 250
ENST00000558861 LRRC28-007 protein_coding Homo_sapiens 0 198
ENST00000558879 LRRC28-008 protein_coding Homo_sapiens 6e-28 128
ENST00000558890 LRRC28-012 retained_intron Homo_sapiens 0 710
ENST00000559399 LRRC28-017 processed_transcript Homo_sapiens 0 320
ENST00000559433 LRRC28-021 nonsense_mediated_decay Homo_sapiens 0 608
ENST00000559774 LRRC28-014 processed_transcript Homo_sapiens 0 411
ENST00000559819 LRRC28-004 retained_intron Homo_sapiens 0 833
ENST00000560236 LRRC28-018 nonsense_mediated_decay Homo_sapiens 2.00386e-43 180
ENST00000561253 LRRC28-022 nonsense_mediated_decay Homo_sapiens 6e-18 95
ENST00000561276 LRRC28-006 protein_coding Homo_sapiens 0 713
ENST00000561431 LRRC28-019 processed_transcript Homo_sapiens 3e-27 126

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