C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine rich repeat containing 28
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000053950 Lrrc28-001 ENSMUSG00000030556 10090 - 7:67513411-67645231 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000053950
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000053950 2.245±0.31 0.952±0.12 4.091±0.66 4.177±0.50 1.733±0.56 1.164±0.36 0.972±0.42 3.550±0.35 2.621±0.96 2.042±0.40 1.410±0.53 1.799±0.91 3.312±2.09 1.356±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000301981 LRRC28-001 protein_coding Homo_sapiens 0 1404
ENST00000331450 LRRC28-002 protein_coding Homo_sapiens 0 350
ENST00000447360 LRRC28-003 protein_coding Homo_sapiens 0 1070
ENST00000558172 LRRC28-010 protein_coding Homo_sapiens 0 346
ENST00000558248 LRRC28-013 retained_intron Homo_sapiens 0 418
ENST00000558471 LRRC28-009 nonsense_mediated_decay Homo_sapiens 0 499
ENST00000558500 LRRC28-020 processed_transcript Homo_sapiens 0 573
ENST00000558771 LRRC28-016 processed_transcript Homo_sapiens 0 250
ENST00000558861 LRRC28-007 protein_coding Homo_sapiens 0 769
ENST00000558879 LRRC28-008 protein_coding Homo_sapiens 0 272
ENST00000558890 LRRC28-012 retained_intron Homo_sapiens 0 710
ENST00000559399 LRRC28-017 processed_transcript Homo_sapiens 0 575
ENST00000559433 LRRC28-021 nonsense_mediated_decay Homo_sapiens 0 835
ENST00000559774 LRRC28-014 processed_transcript Homo_sapiens 0 411
ENST00000559819 LRRC28-004 retained_intron Homo_sapiens 0 835
ENST00000560213 LRRC28-005 retained_intron Homo_sapiens 0 272
ENST00000560236 LRRC28-018 nonsense_mediated_decay Homo_sapiens 2.00386e-43 180
ENST00000561253 LRRC28-022 nonsense_mediated_decay Homo_sapiens 0 592
ENST00000561276 LRRC28-006 protein_coding Homo_sapiens 0 1014
ENST00000561431 LRRC28-019 processed_transcript Homo_sapiens 3e-27 126
ENST00000603662 RP11-130N24.2-001 processed_pseudogene Homo_sapiens 0 207

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