C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine rich repeat containing 28
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000187953 Lrrc28-003 ENSMUSG00000030556 10090 - 7:67513412-67641306 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartMuscleOvaryENSMUST00000187953
Transcript ID Adipose Brain Breast Colon Heart Muscle Ovary
ENSMUST00000187953 0.857±0.00 1.602±0.58 1.816±0.00 0.631±0.00 0.614±0.00 1.280±0.00 1.124±0.09

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000301981 LRRC28-001 protein_coding Homo_sapiens 0 684
ENST00000331450 LRRC28-002 protein_coding Homo_sapiens 0 243
ENST00000447360 LRRC28-003 protein_coding Homo_sapiens 0 350
ENST00000558172 LRRC28-010 protein_coding Homo_sapiens 0 346
ENST00000558248 LRRC28-013 retained_intron Homo_sapiens 0 263
ENST00000558471 LRRC28-009 nonsense_mediated_decay Homo_sapiens 0 350
ENST00000558500 LRRC28-020 processed_transcript Homo_sapiens 0 243
ENST00000558771 LRRC28-016 processed_transcript Homo_sapiens 0 473
ENST00000558861 LRRC28-007 protein_coding Homo_sapiens 0 243
ENST00000558879 LRRC28-008 protein_coding Homo_sapiens 0 244
ENST00000558890 LRRC28-012 retained_intron Homo_sapiens 0 560
ENST00000559399 LRRC28-017 processed_transcript Homo_sapiens 0 243
ENST00000559433 LRRC28-021 nonsense_mediated_decay Homo_sapiens 0 468
ENST00000559774 LRRC28-014 processed_transcript Homo_sapiens 0 263
ENST00000559819 LRRC28-004 retained_intron Homo_sapiens 0 684
ENST00000560213 LRRC28-005 retained_intron Homo_sapiens 0 250
ENST00000560236 LRRC28-018 nonsense_mediated_decay Homo_sapiens 2.00386e-43 180
ENST00000561253 LRRC28-022 nonsense_mediated_decay Homo_sapiens 0 243
ENST00000561276 LRRC28-006 protein_coding Homo_sapiens 0 564
ENST00000561431 LRRC28-019 processed_transcript Homo_sapiens 3e-27 126
ENST00000603662 RP11-130N24.2-001 processed_pseudogene Homo_sapiens 0 207

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