C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Tia1 cytotoxic granule-associated RNA binding protein-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030846 Tial1 10090 - 7:128439777-128461717 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000033135 Tial1-004 128442280-128461355 protein_coding
  ENSMUST00000106226 Tial1-001 128439777-128461672 protein_coding
  ENSMUST00000106228 Tial1-006 128441403-128461209 protein_coding
  ENSMUST00000123666 Tial1-003 128442280-128461717 nonsense_mediated_decay
  ENSMUST00000133089 Tial1-010 128443814-128448213 processed_transcript
  ENSMUST00000133444 Tial1-002 128441403-128461673 processed_transcript
  ENSMUST00000136782 Tial1-009 128447848-128448878 retained_intron
  ENSMUST00000141079 Tial1-007 128442267-128461652 retained_intron
  ENSMUST00000141126 Tial1-005 128442311-128461346 processed_transcript
  ENSMUST00000152328 Tial1-008 128444289-128445705 retained_intron
  ENSMUST00000165023 Tial1-201 128441795-128461323 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033135ENSMUST00000106226ENSMUST00000106228ENSMUST00000123666ENSMUST00000133089ENSMUST00000133444ENSMUST00000141079ENSMUST00000141126ENSMUST00000165023
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033135 3.665±0.00 N/A N/A 36.112±0.00 N/A N/A N/A 3.524±0.82 17.727±6.18 N/A 6.732±1.75 67.062±0.00 23.814±22.43 15.132±12.00
ENSMUST00000106226 4.328±1.80 3.503±0.36 N/A 22.401±0.00 3.445±0.63 2.746±0.38 2.044±1.00 3.144±0.31 4.009±0.98 4.533±0.48 2.613±1.04 5.650±1.21 5.442±0.02 1.603±0.16
ENSMUST00000106228 N/A N/A N/A 10.566±0.00 N/A N/A N/A N/A N/A N/A N/A 16.994±0.00 N/A N/A
ENSMUST00000123666 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.241±1.93 N/A 3.913±0.55
ENSMUST00000133089 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.808±2.66 N/A
ENSMUST00000133444 N/A N/A N/A N/A N/A 1.689±0.03 N/A N/A N/A N/A N/A 4.826±0.59 N/A 2.433±0.43
ENSMUST00000141079 10.306±2.11 15.534±5.11 18.935±3.42 25.740±6.88 9.287±0.98 8.754±3.37 6.651±0.77 4.837±0.73 13.298±6.62 9.610±1.36 3.875±0.52 19.875±4.89 8.056±0.94 5.897±0.72
ENSMUST00000141126 N/A N/A N/A N/A 11.915±0.00 N/A 3.668±0.00 N/A N/A N/A N/A N/A N/A 4.600±0.37
ENSMUST00000165023 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.893±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003IZ CIL_0003IZ_0002 CGP 7:128373621-128461717
CIL_0004GP CIL_0004GP_0003 CGP 7:128439777-128546977

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006915 IEA apoptotic process
GO:0007281 IMP germ cell development
GO:0008284 IMP positive regulation of cell proliferation
GO:0010494 IDA cytoplasmic stress granule
GO:0017091 IDA AU-rich element binding
GO:0017145 IMP stem cell division
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009525 tial1 TIA1 cytotoxic granule-associated RNA binding protein-like 1 protein_coding Danio_rerio
ENSG00000151923 TIAL1 TIA1 cytotoxic granule-associated RNA binding protein-like 1 protein_coding Homo_sapiens

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