C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Tia1 cytotoxic granule-associated RNA binding protein-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106228 Tial1-006 ENSMUSG00000030846 10090 - 7:128441403-128461209 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryENSMUST00000106228
Transcript ID Brain Ovary
ENSMUST00000106228 10.566±0.00 16.994±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003IZ CIL_0003IZ_0002 CGP 7:128373621-128461717
CIL_0004GP CIL_0004GP_0003 CGP 7:128439777-128546977

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0007281 IMP germ cell development
GO:0008284 IMP positive regulation of cell proliferation
GO:0017091 IDA AU-rich element binding
GO:0017145 IMP stem cell division

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000369086 TIAL1-013 protein_coding Homo_sapiens 2e-17 94
ENST00000369093 TIAL1-005 protein_coding Homo_sapiens 0 1266
ENST00000412524 TIAL1-012 protein_coding Homo_sapiens 7e-37 158
ENST00000436547 TIAL1-009 protein_coding Homo_sapiens 0 484
ENST00000462373 TIAL1-011 processed_transcript Homo_sapiens 9e-38 159
ENST00000463089 TIAL1-004 processed_transcript Homo_sapiens 0 791
ENST00000470781 TIAL1-008 retained_intron Homo_sapiens 0 501
ENST00000479729 TIAL1-010 nonsense_mediated_decay Homo_sapiens 2e-32 143
ENST00000489822 TIAL1-006 retained_intron Homo_sapiens 0 544
ENST00000497671 TIAL1-007 nonsense_mediated_decay Homo_sapiens 0 525

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