C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: golgi associated, gamma adaptin ear containing, ARF binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000124566 Gga2-003 ENSMUSG00000030872 10090 - 7:121986722-122021167 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000124566
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000124566 3.120±0.63 0.948±0.00 7.009±0.30 2.476±1.53 2.773±0.39 0.852±0.18 1.928±0.06 3.214±0.77 2.846±2.25 1.853±0.38 1.140±0.42 4.353±0.50 16.878±7.39 0.687±0.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006D5 CIL_0006D5_0002 CGP 7:121922839-122021222
CIL_0006D4 CIL_0006D4_0002 CGP 7:121986722-122067263

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005768 IEA endosome
GO:0006886 IEA intracellular protein transport
GO:0016192 IEA vesicle-mediated transport
GO:0030131 IEA clathrin adaptor complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000309859 GGA2-001 protein_coding Homo_sapiens 0 1079
ENST00000562117 GGA2-009 protein_coding Homo_sapiens 0 263
ENST00000562944 GGA2-006 protein_coding Homo_sapiens 0 272
ENST00000563047 GGA2-018 nonsense_mediated_decay Homo_sapiens 0 353
ENST00000563494 GGA2-010 nonsense_mediated_decay Homo_sapiens 0 529
ENST00000566547 GGA2-004 retained_intron Homo_sapiens 1.99965e-42 176
ENST00000566685 GGA2-016 processed_transcript Homo_sapiens 0 281
ENST00000567201 GGA2-017 retained_intron Homo_sapiens 0 658
ENST00000567468 GGA2-002 protein_coding Homo_sapiens 0 723
ENST00000568799 GGA2-007 retained_intron Homo_sapiens 0 294
ENST00000568922 GGA2-014 retained_intron Homo_sapiens 0 603
ENST00000569182 GGA2-013 processed_transcript Homo_sapiens 1.99965e-42 176
ENST00000569189 GGA2-008 nonsense_mediated_decay Homo_sapiens 0 248
ENST00000569300 GGA2-012 protein_coding Homo_sapiens 0 418
ENST00000570111 GGA2-011 nonsense_mediated_decay Homo_sapiens 0 568

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