C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein, X chromosome
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000114726 Rbmx-002 ENSMUSG00000031134 10090 - X:57386362-57393036 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000114726
Transcript ID Adipose Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000114726 2.080±0.00 3.411±0.51 2.637±0.64 2.931±0.36 2.396±2.00 4.288±0.89 2.137±0.42 3.120±1.40 6.289±0.97 0.462±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000PR CIL_0000PR_0003 CGP X:57231485-57393036
CIL_0003TR CIL_0003TR_0002 CGP X:57383530-57488767

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000381 IEA regulation of alternative mRNA splicing, via spliceosome
GO:0001047 IEA core promoter binding
GO:0001649 IEA osteoblast differentiation
GO:0003682 IEA chromatin binding
GO:0003723 IEA RNA binding
GO:0003729 IEA mRNA binding
GO:0005515 IEA protein binding
GO:0005615 IEA extracellular space
GO:0005634 IEA nucleus
GO:0005719 IEA nuclear euchromatin
GO:0006351 IEA transcription, DNA-templated
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0006509 IEA membrane protein ectodomain proteolysis
GO:0016020 IEA membrane
GO:0044530 IEA supraspliceosomal complex
GO:0044822 IEA poly(A) RNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0070062 IEA extracellular vesicular exosome
GO:0071013 IEA catalytic step 2 spliceosome
GO:0071347 IEA cellular response to interleukin-1

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000320676 RBMX-001 protein_coding Homo_sapiens 0 2128
ENST00000321792 RBMXL1-001 protein_coding Homo_sapiens 0 2041
ENST00000399794 RBMXL1-201 protein_coding Homo_sapiens 0 2041
ENST00000408004 RBMXP1-001 processed_pseudogene Homo_sapiens 0 1338
ENST00000413769 RBMXL1-002 processed_transcript Homo_sapiens 0 617
ENST00000419968 RBMX-007 protein_coding Homo_sapiens 0 1182
ENST00000431446 RBMX-003 protein_coding Homo_sapiens 0 453
ENST00000434705 RBMXP2-001 processed_pseudogene Homo_sapiens 0 1543
ENST00000456392 RP6-159A1.2-001 processed_pseudogene Homo_sapiens 0 503
ENST00000464781 RBMX-002 nonsense_mediated_decay Homo_sapiens 0 1589
ENST00000496459 RBMX-004 processed_transcript Homo_sapiens 0 239
ENST00000507797 RBMXP4-001 processed_pseudogene Homo_sapiens 0 701
ENST00000528645 RP11-718B12.1-001 processed_pseudogene Homo_sapiens 0 1384
ENST00000562646 RBMX-006 protein_coding Homo_sapiens 0 1186
ENST00000563370 RBMX-009 nonsense_mediated_decay Homo_sapiens 0 379
ENST00000565438 RBMX-005 protein_coding Homo_sapiens 0 1604
ENST00000565907 RBMX-011 retained_intron Homo_sapiens 4e-39 165
ENST00000567262 RBMX-010 processed_transcript Homo_sapiens 0 296
ENST00000568578 RBMX-008 nonsense_mediated_decay Homo_sapiens 0 952

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