C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein, X chromosome
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000140384 Rbmx-001 ENSMUSG00000031134 10090 - X:57383530-57392981 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000140384
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000140384 5.146±0.83 2.424±0.00 12.447±4.09 37.829±9.69 3.020±0.88 2.427±0.64 3.077±0.75 3.846±0.99 6.266±4.89 4.703±1.43 2.944±0.51 7.880±6.85 12.439±4.10 2.070±0.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000PR CIL_0000PR_0003 CGP X:57231485-57393036
CIL_0003TR CIL_0003TR_0002 CGP X:57383530-57488767

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0006351 IEA transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000320676 RBMX-001 protein_coding Homo_sapiens 0 1188
ENST00000321792 RBMXL1-001 protein_coding Homo_sapiens 0 1149
ENST00000399794 RBMXL1-201 protein_coding Homo_sapiens 0 1149
ENST00000413769 RBMXL1-002 processed_transcript Homo_sapiens 0 627
ENST00000419968 RBMX-007 protein_coding Homo_sapiens 0 1223
ENST00000431446 RBMX-003 protein_coding Homo_sapiens 0 523
ENST00000434705 RBMXP2-001 processed_pseudogene Homo_sapiens 0 1053
ENST00000464781 RBMX-002 nonsense_mediated_decay Homo_sapiens 0 643
ENST00000496459 RBMX-004 processed_transcript Homo_sapiens 3e-16 92
ENST00000507797 RBMXP4-001 processed_pseudogene Homo_sapiens 0 701
ENST00000528645 RP11-718B12.1-001 processed_pseudogene Homo_sapiens 0 959
ENST00000561733 RBMX-012 processed_transcript Homo_sapiens 0.00000002 64
ENST00000562646 RBMX-006 protein_coding Homo_sapiens 0 1188
ENST00000563370 RBMX-009 nonsense_mediated_decay Homo_sapiens 0 379
ENST00000565438 RBMX-005 protein_coding Homo_sapiens 0 889
ENST00000565907 RBMX-011 retained_intron Homo_sapiens 4e-39 165
ENST00000567262 RBMX-010 processed_transcript Homo_sapiens 0 302
ENST00000568578 RBMX-008 nonsense_mediated_decay Homo_sapiens 0 643

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