C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein, X chromosome
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000114730 Rbmx-005 ENSMUSG00000031134 10090 - X:57386358-57392962 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverOvaryPlacentaENSMUST00000114730
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Ovary Placenta
ENSMUST00000114730 2.447±0.00 0.766±0.00 3.411±0.00 21.783±5.52 5.114±0.00 2.142±0.73 2.872±0.15 3.371±0.00 6.027±3.52 11.329±5.97

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000PR CIL_0000PR_0003 CGP X:57231485-57393036
CIL_0003TR CIL_0003TR_0002 CGP X:57383530-57488767

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0006351 IEA transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000320676 RBMX-001 protein_coding Homo_sapiens 0 2128
ENST00000321792 RBMXL1-001 protein_coding Homo_sapiens 0 2039
ENST00000399794 RBMXL1-201 protein_coding Homo_sapiens 0 2039
ENST00000408004 RBMXP1-001 processed_pseudogene Homo_sapiens 0 1338
ENST00000413769 RBMXL1-002 processed_transcript Homo_sapiens 0 616
ENST00000419968 RBMX-007 protein_coding Homo_sapiens 0 1182
ENST00000431446 RBMX-003 protein_coding Homo_sapiens 0 453
ENST00000434705 RBMXP2-001 processed_pseudogene Homo_sapiens 0 1543
ENST00000456392 RP6-159A1.2-001 processed_pseudogene Homo_sapiens 0 503
ENST00000464781 RBMX-002 nonsense_mediated_decay Homo_sapiens 0 1589
ENST00000496459 RBMX-004 processed_transcript Homo_sapiens 0 239
ENST00000507797 RBMXP4-001 processed_pseudogene Homo_sapiens 0 701
ENST00000528645 RP11-718B12.1-001 processed_pseudogene Homo_sapiens 0 1384
ENST00000562646 RBMX-006 protein_coding Homo_sapiens 0 1186
ENST00000563370 RBMX-009 nonsense_mediated_decay Homo_sapiens 0 379
ENST00000565438 RBMX-005 protein_coding Homo_sapiens 0 1604
ENST00000565907 RBMX-011 retained_intron Homo_sapiens 4e-39 165
ENST00000567262 RBMX-010 processed_transcript Homo_sapiens 0 296
ENST00000568578 RBMX-008 nonsense_mediated_decay Homo_sapiens 0 952

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