C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000143908 Taf1-005 ENSMUSG00000031314 10090 + X:101532759-101601034 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverMuscleOvaryPlacentaENSMUST00000143908
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Muscle Ovary Placenta
ENSMUST00000143908 0.608±0.00 0.789±0.36 1.135±0.00 0.544±0.06 0.572±0.00 0.546±0.00 0.478±0.00 0.505±0.24 0.279±0.02 1.316±0.79 2.591±0.89

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00066O CIL_00066O_0002 CGP X:101449088-101601789
CIL_0000TR CIL_0000TR_0002 CGP X:101532734-101684351

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005669 ISO transcription factor TFIID complex
GO:0006352 IEA DNA-templated transcription, initiation
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0045120 IDA pronucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000242310 TAF1L-001 protein_coding Homo_sapiens 0 6874
ENST00000276072 TAF1-008 protein_coding Homo_sapiens 0 6876
ENST00000373775 TAF1-014 nonsense_mediated_decay Homo_sapiens 0 1397
ENST00000373790 TAF1-009 protein_coding Homo_sapiens 0 6163
ENST00000423759 TAF1-201 protein_coding Homo_sapiens 0 6848
ENST00000437147 TAF1-010 nonsense_mediated_decay Homo_sapiens 0 1923
ENST00000461157 TAF1-022 processed_transcript Homo_sapiens 0 418
ENST00000461764 TAF1-021 processed_transcript Homo_sapiens 0 1323
ENST00000462588 TAF1-012 processed_transcript Homo_sapiens 0 1332
ENST00000463163 TAF1-007 protein_coding Homo_sapiens 0 505
ENST00000467309 TAF1-016 processed_transcript Homo_sapiens 0 291
ENST00000468167 TAF1-011 processed_transcript Homo_sapiens 0 706
ENST00000472567 TAF1-005 retained_intron Homo_sapiens 0 379
ENST00000474917 TAF1-020 retained_intron Homo_sapiens 0 244
ENST00000478305 TAF1-006 retained_intron Homo_sapiens 0 701
ENST00000482544 TAF1-018 processed_transcript Homo_sapiens 0 630
ENST00000483365 TAF1-019 retained_intron Homo_sapiens 0 564
ENST00000483985 TAF1-017 protein_coding Homo_sapiens 0 1081
ENST00000485087 TAF1-013 processed_transcript Homo_sapiens 0 824
ENST00000492404 TAF1-015 processed_transcript Homo_sapiens 0 822

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