C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000129487 Taf1-003 ENSMUSG00000031314 10090 + X:101556310-101601034 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000129487
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000129487 0.784±0.02 0.703±0.23 4.300±0.20 3.378±0.50 1.145±0.33 1.061±0.35 0.690±0.10 0.758±0.30 2.386±1.75 1.875±0.86 0.853±0.26 1.474±1.10 3.423±0.92 0.525±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00066O CIL_00066O_0002 CGP X:101449088-101601789
CIL_0000TR CIL_0000TR_0002 CGP X:101532734-101684351

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000242310 TAF1L-001 protein_coding Homo_sapiens 0 2935
ENST00000276072 TAF1-008 protein_coding Homo_sapiens 0 3945
ENST00000373775 TAF1-014 nonsense_mediated_decay Homo_sapiens 0 1881
ENST00000373790 TAF1-009 protein_coding Homo_sapiens 0 3964
ENST00000423759 TAF1-201 protein_coding Homo_sapiens 0 3936
ENST00000437147 TAF1-010 nonsense_mediated_decay Homo_sapiens 0 1423
ENST00000461157 TAF1-022 processed_transcript Homo_sapiens 0 418
ENST00000461764 TAF1-021 processed_transcript Homo_sapiens 0 822
ENST00000462588 TAF1-012 processed_transcript Homo_sapiens 0 811
ENST00000463163 TAF1-007 protein_coding Homo_sapiens 0 505
ENST00000467309 TAF1-016 processed_transcript Homo_sapiens 0 291
ENST00000468167 TAF1-011 processed_transcript Homo_sapiens 0 1190
ENST00000482544 TAF1-018 processed_transcript Homo_sapiens 0 486
ENST00000483985 TAF1-017 protein_coding Homo_sapiens 0 1081
ENST00000485087 TAF1-013 processed_transcript Homo_sapiens 0 1308
ENST00000492404 TAF1-015 processed_transcript Homo_sapiens 0 1530

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