C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118878 Taf1-001 ENSMUSG00000031314 10090 + X:101532734-101601034 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000118878
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000118878 1.765±0.75 0.498±0.31 2.135±0.02 4.698±2.40 0.568±0.29 0.794±0.28 0.749±0.17 1.182±0.53 1.370±1.04 1.897±0.21 1.079±0.20 2.490±2.54 4.036±1.46 0.898±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00066O CIL_00066O_0002 CGP X:101449088-101601789
CIL_0000TR CIL_0000TR_0002 CGP X:101532734-101684351

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0004402 IDA histone acetyltransferase activity
GO:0004674 IEA protein serine/threonine kinase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005669 ISO transcription factor TFIID complex
GO:0006352 IEA DNA-templated transcription, initiation
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006468 IEA protein phosphorylation
GO:0007049 IEA cell cycle
GO:0016573 IDA histone acetylation
GO:0045120 IDA pronucleus
GO:0071339 ISS MLL1 complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000242310 TAF1L-001 protein_coding Homo_sapiens 0 5742
ENST00000276072 TAF1-008 protein_coding Homo_sapiens 0 6964
ENST00000373775 TAF1-014 nonsense_mediated_decay Homo_sapiens 0 1881
ENST00000373790 TAF1-009 protein_coding Homo_sapiens 0 7585
ENST00000423759 TAF1-201 protein_coding Homo_sapiens 0 6955
ENST00000437147 TAF1-010 nonsense_mediated_decay Homo_sapiens 0 1423
ENST00000461157 TAF1-022 processed_transcript Homo_sapiens 0 418
ENST00000461764 TAF1-021 processed_transcript Homo_sapiens 0 822
ENST00000462588 TAF1-012 processed_transcript Homo_sapiens 0 811
ENST00000463163 TAF1-007 protein_coding Homo_sapiens 0 505
ENST00000467309 TAF1-016 processed_transcript Homo_sapiens 0 291
ENST00000468167 TAF1-011 processed_transcript Homo_sapiens 0 1190
ENST00000472567 TAF1-005 retained_intron Homo_sapiens 0 379
ENST00000474917 TAF1-020 retained_intron Homo_sapiens 0 244
ENST00000478305 TAF1-006 retained_intron Homo_sapiens 0 701
ENST00000482544 TAF1-018 processed_transcript Homo_sapiens 0 486
ENST00000483365 TAF1-019 retained_intron Homo_sapiens 0 555
ENST00000483985 TAF1-017 protein_coding Homo_sapiens 0 1081
ENST00000485087 TAF1-013 processed_transcript Homo_sapiens 0 1308
ENST00000492404 TAF1-015 processed_transcript Homo_sapiens 0 1530

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