C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: core binding factor beta
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031885 Cbfb 10090 + 8:105170674-105217989 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000052209 Cbfb-001 105170674-105217989 protein_coding
  ENSMUST00000109392 Cbfb-003 105170744-105217981 protein_coding
  ENSMUST00000109394 Cbfb-004 105170945-105217981 protein_coding
  ENSMUST00000109395 Cbfb-002 105170744-105217981 protein_coding
  ENSMUST00000186070 Cbfb-006 105171109-105178703 retained_intron
  ENSMUST00000187323 Cbfb-008 105171564-105194535 processed_transcript
  ENSMUST00000190915 Cbfb-007 105171492-105194555 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000052209ENSMUST00000109392ENSMUST00000109394ENSMUST00000109395ENSMUST00000190915
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000052209 1.292±0.10 1.387±0.00 4.745±0.08 3.215±0.10 2.426±0.00 0.917±0.00 1.235±0.42 0.980±0.39 1.545±0.93 2.328±0.47 12.318±1.37 2.506±1.83 4.049±1.68 1.471±0.44
ENSMUST00000109392 5.079±1.28 5.451±2.64 8.834±0.43 6.432±3.37 3.826±1.76 4.677±1.97 2.948±0.87 2.906±0.67 3.192±1.38 7.781±0.67 14.775±2.46 7.758±3.76 7.912±3.85 2.184±0.36
ENSMUST00000109394 N/A N/A N/A 0.492±0.00 N/A N/A N/A N/A N/A N/A N/A 8.715±0.22 1.056±0.00 N/A
ENSMUST00000109395 2.298±0.00 8.119±3.86 N/A N/A 7.524±2.35 4.054±0.60 0.713±0.00 1.250±0.03 N/A N/A N/A 4.560±2.09 N/A N/A
ENSMUST00000190915 N/A N/A N/A 23.241±0.00 N/A N/A N/A N/A N/A N/A N/A 123.360±0.00 176.831±0.00 50.408±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005T3 CIL_0005T3_0002 CGP 8:105131800-105217989
CIL_0005T2 CIL_0005T2_0002 CGP 8:105170674-105253053

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001503 IMP ossification
GO:0001649 IMP osteoblast differentiation
GO:0003677 IEA DNA binding
GO:0003713 IEA transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0016020 IEA membrane
GO:0030098 IMP lymphocyte differentiation
GO:0030099 IMP myeloid cell differentiation
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048469 IMP cell maturation
GO:0060216 IMP definitive hemopoiesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040917 cbfb core-binding factor, beta subunit protein_coding Danio_rerio
ENSG00000067955 CBFB core-binding factor, beta subunit protein_coding Homo_sapiens

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