C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: core-binding factor, beta subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000067955 CBFB 9606 + 16:67029116-67101058 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000290858 CBFB-001 67029147-67101058 protein_coding
  ENST00000412916 CBFB-003 67029245-67101022 protein_coding
  ENST00000561924 CBFB-007 67029116-67098811 protein_coding
  ENST00000563939 CBFB-009 67029952-67082297 protein_coding
  ENST00000564034 CBFB-006 67029179-67066796 protein_coding
  ENST00000565389 CBFB-002 67029461-67099443 protein_coding
  ENST00000566281 CBFB-011 67082085-67098969 retained_intron
  ENST00000567947 CBFB-010 67036427-67066962 retained_intron
  ENST00000568858 CBFB-005 67093398-67099391 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000290858ENST00000412916ENST00000561924ENST00000563939ENST00000566281
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000290858 N/A N/A N/A 1.471±0.00 2.948±0.04 N/A 1.343±0.76 2.187±0.00 0.977±0.19 4.849±2.84 3.968±0.00 4.417±2.23 1.563±0.00 N/A
ENST00000412916 12.429±0.00 4.185±0.00 1.494±0.00 4.557±3.94 N/A 8.241±0.00 2.788±2.15 3.388±2.87 1.224±0.29 2.650±0.05 17.337±0.00 3.665±0.74 2.555±1.36 2.439±0.33
ENST00000561924 N/A N/A 6.892±0.00 6.960±0.00 12.158±0.00 5.304±0.00 4.554±0.00 2.179±0.00 4.639±0.00 3.511±0.00 N/A 10.440±0.53 11.317±0.00 4.814±0.00
ENST00000563939 N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.590±0.00 6.750±0.00 8.382±0.00 N/A 6.216±0.00
ENST00000566281 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.624±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WN CIL_0007WN_0001 VISTA 16:66603173-67205657
CIL_0005T3 CIL_0005T3_0001 CGP 16:66988589-67101058
CIL_0005T2 CIL_0005T2_0001 CGP 16:67029116-67148539

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001503 IEA ossification
GO:0001649 IEA osteoblast differentiation
GO:0003677 IEA DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0003713 IEA transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0016020 IDA membrane
GO:0030098 IEA lymphocyte differentiation
GO:0030099 IEA myeloid cell differentiation
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048469 IEA cell maturation
GO:0060216 IEA definitive hemopoiesis
GO:2001141 IEA regulation of RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040917 cbfb core-binding factor, beta subunit protein_coding Danio_rerio
ENSMUSG00000031885 Cbfb core binding factor beta protein_coding Mus_musculus

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