C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cell adhesion molecule 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032076 Cadm1 10090 + 9:47530173-47857637 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000034581 Cadm1-006 47530373-47850390 protein_coding
  ENSMUST00000085909 Cadm1-002 47530257-47851029 protein_coding
  ENSMUST00000114547 Cadm1-003 47530257-47853380 protein_coding
  ENSMUST00000114548 Cadm1-001 47530173-47853385 protein_coding
  ENSMUST00000124073 Cadm1-007 47530352-47819080 retained_intron
  ENSMUST00000143026 Cadm1-005 47530244-47857637 protein_coding
  ENSMUST00000148925 Cadm1-009 47530352-47792583 retained_intron
  ENSMUST00000151624 Cadm1-008 47530373-47814054 processed_transcript
  ENSMUST00000152459 Cadm1-004 47530211-47850587 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034581ENSMUST00000085909ENSMUST00000114547ENSMUST00000114548ENSMUST00000124073ENSMUST00000143026ENSMUST00000151624ENSMUST00000152459
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034581 2.226±1.21 2.524±0.00 N/A 47.888±0.00 1.672±0.00 1.318±0.34 0.668±0.22 N/A 4.431±1.35 23.722±3.70 1.482±0.22 N/A 0.763±0.00 12.334±1.52
ENSMUST00000085909 N/A 1.341±0.25 N/A N/A 0.700±0.11 0.890±0.46 N/A 0.896±0.35 1.199±0.22 N/A 0.926±0.21 1.992±0.68 0.661±0.15 12.201±7.43
ENSMUST00000114547 2.941±2.17 4.094±0.41 4.402±0.35 N/A 1.304±0.11 1.164±0.30 0.525±0.13 1.574±0.40 2.842±0.85 40.097±1.00 0.327±0.05 4.429±1.01 1.705±1.85 N/A
ENSMUST00000114548 N/A N/A N/A 19.028±8.17 N/A 0.392±0.00 N/A N/A N/A N/A 0.495±0.15 N/A N/A 6.600±2.31
ENSMUST00000124073 N/A N/A N/A N/A 2.715±0.00 0.716±0.12 0.451±0.00 0.651±0.00 2.538±1.00 N/A N/A 3.296±1.23 N/A N/A
ENSMUST00000143026 N/A 2.676±0.60 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151624 2.927±0.00 4.545±1.27 N/A N/A 1.410±0.68 1.017±0.00 0.393±0.00 N/A 1.095±0.00 N/A N/A 3.257±0.63 2.714±0.00 14.240±0.00
ENSMUST00000152459 N/A N/A N/A N/A N/A N/A 0.196±0.00 N/A N/A N/A 1.099±0.00 4.136±0.00 3.719±0.39 17.251±14.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JB CIL_0007JB_0009 UCNEbase 9:46899838-48183264
CIL_000803 CIL_000803_0002 VISTA 9:46978512-47582714
CIL_00080B CIL_00080B_0002 VISTA 9:47076512-47677360

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001889 IEA liver development
GO:0002376 IEA immune system process
GO:0005102 IPI receptor binding
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0005911 IDA cell-cell junction
GO:0006915 IEA apoptotic process
GO:0007155 IDA cell adhesion
GO:0007156 IDA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007157 IDA heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0007283 IEA spermatogenesis
GO:0007416 IDA synapse assembly
GO:0007420 IEA brain development
GO:0008021 IDA synaptic vesicle
GO:0008037 IDA cell recognition
GO:0009826 IMP unidimensional cell growth
GO:0016021 IEA integral component of membrane
GO:0016323 IDA basolateral plasma membrane
GO:0016338 IDA calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules
GO:0030154 IEA cell differentiation
GO:0030165 IPI PDZ domain binding
GO:0030424 IDA axon
GO:0030425 IDA dendrite
GO:0042271 IDA susceptibility to natural killer cell mediated cytotoxicity
GO:0042803 IDA protein homodimerization activity
GO:0043005 IEA neuron projection
GO:0045202 IDA synapse
GO:0045954 IDA positive regulation of natural killer cell mediated cytotoxicity
GO:0050715 IEA positive regulation of cytokine secretion
GO:0050839 IEA cell adhesion molecule binding
GO:0051606 IDA detection of stimulus
GO:0060348 IMP bone development
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000031075 cadm1a cell adhesion molecule 1a protein_coding Danio_rerio
ENSDARG00000042677 cadm1b cell adhesion molecule 1b protein_coding Danio_rerio
ENSG00000182985 CADM1 cell adhesion molecule 1 protein_coding Homo_sapiens

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