C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cell adhesion molecule 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034581 Cadm1-006 ENSMUSG00000032076 10090 + 9:47530373-47850390 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungMusclePlacentaTestisENSMUST00000034581
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Muscle Placenta Testis
ENSMUST00000034581 2.226±1.21 2.524±0.00 47.888±0.00 1.672±0.00 1.318±0.34 0.668±0.22 4.431±1.35 23.722±3.70 1.482±0.22 0.763±0.00 12.334±1.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JB CIL_0007JB_0009 UCNEbase 9:46899838-48183264
CIL_000803 CIL_000803_0002 VISTA 9:46978512-47582714
CIL_00080B CIL_00080B_0002 VISTA 9:47076512-47677360

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002376 IEA immune system process
GO:0005102 IPI receptor binding
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0005911 IDA cell-cell junction
GO:0006915 IEA apoptotic process
GO:0007155 IDA cell adhesion
GO:0007156 IDA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007157 IDA heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0007283 IEA spermatogenesis
GO:0007416 IDA synapse assembly
GO:0008021 IDA synaptic vesicle
GO:0008037 IDA cell recognition
GO:0009826 IMP unidimensional cell growth
GO:0016021 IEA integral component of membrane
GO:0016323 IDA basolateral plasma membrane
GO:0016338 IDA calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules
GO:0030154 IEA cell differentiation
GO:0030165 IPI PDZ domain binding
GO:0030424 IDA axon
GO:0030425 IDA dendrite
GO:0042271 IDA susceptibility to natural killer cell mediated cytotoxicity
GO:0042803 IDA protein homodimerization activity
GO:0045202 IDA synapse
GO:0045954 IDA positive regulation of natural killer cell mediated cytotoxicity
GO:0051606 IDA detection of stimulus
GO:0060348 IMP bone development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000331581 CADM1-003 protein_coding Homo_sapiens 0 1365
ENST00000452722 CADM1-001 protein_coding Homo_sapiens 0 1365
ENST00000536727 CADM1-006 protein_coding Homo_sapiens 0 1363
ENST00000537058 CADM1-005 protein_coding Homo_sapiens 0 1365
ENST00000537140 CADM1-004 processed_transcript Homo_sapiens 0 1519
ENST00000540373 CADM1-016 retained_intron Homo_sapiens 0 265
ENST00000540852 CADM1-018 retained_intron Homo_sapiens 0 377
ENST00000540951 CADM1-021 nonsense_mediated_decay Homo_sapiens 0 466
ENST00000541434 CADM1-007 retained_intron Homo_sapiens 0 1362
ENST00000542447 CADM1-002 protein_coding Homo_sapiens 0 1736
ENST00000542450 CADM1-015 protein_coding Homo_sapiens 0 889
ENST00000543249 CADM1-010 protein_coding Homo_sapiens 0 654
ENST00000543375 CADM1-020 processed_transcript Homo_sapiens 0 377
ENST00000543540 CADM1-013 protein_coding Homo_sapiens 0 763
ENST00000545094 CADM1-014 protein_coding Homo_sapiens 0 704
ENST00000545380 CADM1-008 protein_coding Homo_sapiens 0 1727
ENST00000546000 CADM1-019 retained_intron Homo_sapiens 0 377
ENST00000612235 CADM1-201 protein_coding Homo_sapiens 0 1375
ENST00000612471 CADM1-202 protein_coding Homo_sapiens 0 1591
ENST00000616271 CADM1-203 protein_coding Homo_sapiens 0 1219
ENST00000621043 CADM1-204 protein_coding Homo_sapiens 0 1219
ENST00000621709 CADM1-205 protein_coding Homo_sapiens 0 1219

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