C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cell adhesion molecule 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000151624 Cadm1-008 ENSMUSG00000032076 10090 + 9:47530373-47814054 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartLiverOvaryPlacentaTestisENSMUST00000151624
Transcript ID Adipose Adrenal Breast Colon Heart Liver Ovary Placenta Testis
ENSMUST00000151624 2.927±0.00 4.545±1.27 1.410±0.68 1.017±0.00 0.393±0.00 1.095±0.00 3.257±0.63 2.714±0.00 14.240±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JB CIL_0007JB_0009 UCNEbase 9:46899838-48183264
CIL_000803 CIL_000803_0002 VISTA 9:46978512-47582714
CIL_00080B CIL_00080B_0002 VISTA 9:47076512-47677360

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000331581 CADM1-003 protein_coding Homo_sapiens 0 1362
ENST00000452722 CADM1-001 protein_coding Homo_sapiens 0 1362
ENST00000536727 CADM1-006 protein_coding Homo_sapiens 0 1362
ENST00000537058 CADM1-005 protein_coding Homo_sapiens 0 1362
ENST00000537140 CADM1-004 processed_transcript Homo_sapiens 0 1362
ENST00000540373 CADM1-016 retained_intron Homo_sapiens 0 265
ENST00000540951 CADM1-021 nonsense_mediated_decay Homo_sapiens 0 466
ENST00000541434 CADM1-007 retained_intron Homo_sapiens 0 1423
ENST00000542447 CADM1-002 protein_coding Homo_sapiens 0 1362
ENST00000542450 CADM1-015 protein_coding Homo_sapiens 0 889
ENST00000543249 CADM1-010 protein_coding Homo_sapiens 0 654
ENST00000543540 CADM1-013 protein_coding Homo_sapiens 0 763
ENST00000545094 CADM1-014 protein_coding Homo_sapiens 0 704
ENST00000545380 CADM1-008 protein_coding Homo_sapiens 0 1352
ENST00000612235 CADM1-201 protein_coding Homo_sapiens 0 1218
ENST00000612471 CADM1-202 protein_coding Homo_sapiens 0 1216
ENST00000616271 CADM1-203 protein_coding Homo_sapiens 0 1216
ENST00000621043 CADM1-204 protein_coding Homo_sapiens 0 1216
ENST00000621709 CADM1-205 protein_coding Homo_sapiens 0 1216

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