| Source ID |
Type |
Tax ID |
Position |
| CADM1 |
UCNEbase |
7955 |
21:23658701-23686184  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0007JB_000A [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007JB_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JB_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JB_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JB_0007' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JB_0009' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000182985' => 'cell adhesion molecule 1',
'ENSG00000252870' => 'Small nucleolar RNA ACA59',
'ENSG00000255580' => null,
'ENSG00000256972' => null,
'ENSG00000256315' => null,
'ENSG00000239153' => 'Small nucleolar RNA U13',
'ENSG00000239600' => null,
'ENSG00000244259' => null,
'ENSG00000246100' => 'long intergenic non-protein coding RNA 900',
'ENSG00000255599' => null,
'ENSG00000255689' => null,
'ENSG00000255903' => null,
'ENSG00000256281' => null,
'ENSG00000256717' => null,
'ENSG00000257067' => null,
'ENSG00000257087' => null,
'ENSG00000260254' => null,
'ENSG00000279771' => null,
'ENSG00000279818' => null,
'ENSMUSG00000032076' => 'cell adhesion molecule 1',
'ENSMUSG00000094893' => 'predicted gene 4791',
'ENSMUSG00000094895' => 'predicted gene, 22286',
'ENSMUSG00000099696' => 'RIKEN cDNA 2900052N01 gene'
),
'gene_name_arr' => array(
'ENSG00000182985' => 'CADM1',
'ENSG00000252870' => 'ACA59',
'ENSG00000255580' => 'AP000462.2',
'ENSG00000256972' => 'AP000462.3',
'ENSG00000256315' => 'AP000462.1',
'ENSG00000239153' => 'snoU13',
'ENSG00000239600' => 'AP000797.2',
'ENSG00000244259' => 'AP000797.1',
'ENSG00000246100' => 'LINC00900',
'ENSG00000255599' => 'AP000997.1',
'ENSG00000255689' => 'RP11-136I14.5',
'ENSG00000255903' => 'RP11-136I14.4',
'ENSG00000256281' => 'RP11-136I14.2',
'ENSG00000256717' => 'AP000797.3',
'ENSG00000257067' => 'AP000797.4',
'ENSG00000257087' => 'RP11-136I14.3',
'ENSG00000260254' => 'AP000997.2',
'ENSG00000279771' => 'AP000997.3',
'ENSG00000279818' => 'CTC-774J1.1',
'ENSMUSG00000032076' => 'Cadm1',
'ENSMUSG00000094893' => 'Gm4791',
'ENSMUSG00000094895' => 'Gm22286',
'ENSMUSG00000099696' => 'RP24-247B20.1'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 5 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 6 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 7 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 8 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 9 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 12 => 'Adrenal',
(int) 28 => 'Bladder',
(int) 40 => 'Brain',
(int) 69 => 'Breast',
(int) 95 => 'Colon',
(int) 118 => 'Heart',
(int) 148 => 'Kidney',
(int) 171 => 'Liver',
(int) 195 => 'Lung',
(int) 208 => 'Muscle',
(int) 225 => 'Ovary',
(int) 254 => 'Placenta',
(int) 275 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 91,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000331581' => array(
'start' => '115176295',
'end' => '115504565',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-003'
),
'ENST00000441886' => array(
'start' => '115190609',
'end' => '115214694',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CADM1-017'
),
'ENST00000452722' => array(
'start' => '115169236',
'end' => '115504415',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-001'
),
'ENST00000536727' => array(
'start' => '115174307',
'end' => '115504415',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-006'
),
'ENST00000536781' => array(
'start' => '115399084',
'end' => '115504415',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CADM1-012'
),
'ENST00000537058' => array(
'start' => '115174307',
'end' => '115504415',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-005'
),
'ENST00000537140' => array(
'start' => '115169236',
'end' => '115504523',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CADM1-004'
),
'ENST00000540373' => array(
'start' => '115214699',
'end' => '115218144',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CADM1-016'
),
'ENST00000540852' => array(
'start' => '115176408',
'end' => '115191046',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CADM1-018'
),
'ENST00000540951' => array(
'start' => '115231440',
'end' => '115504415',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'CADM1-021'
),
'ENST00000541434' => array(
'start' => '115214490',
'end' => '115504394',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CADM1-007'
),
'ENST00000542447' => array(
'start' => '115173625',
'end' => '115504523',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-002'
),
'ENST00000542450' => array(
'start' => '115217940',
'end' => '115240980',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-015'
),
'ENST00000543249' => array(
'start' => '115229220',
'end' => '115504957',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-010'
),
'ENST00000543375' => array(
'start' => '115176330',
'end' => '115194110',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CADM1-020'
),
'ENST00000543540' => array(
'start' => '115229156',
'end' => '115287477',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-013'
),
'ENST00000545094' => array(
'start' => '115229189',
'end' => '115256891',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-014'
),
'ENST00000545380' => array(
'start' => '115175341',
'end' => '115504389',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-008'
),
'ENST00000545960' => array(
'start' => '115169218',
'end' => '115198440',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CADM1-011'
),
'ENST00000546000' => array(
'start' => '115176327',
'end' => '115179111',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CADM1-019'
),
'ENST00000612235' => array(
'start' => '115169589',
'end' => '115240422',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-201'
),
'ENST00000612471' => array(
'start' => '115173626',
'end' => '115240421',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-202'
),
'ENST00000616271' => array(
'start' => '115176467',
'end' => '115240421',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-203'
),
'ENST00000621043' => array(
'start' => '115176467',
'end' => '115240421',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-204'
),
'ENST00000621709' => array(
'start' => '115173626',
'end' => '115240421',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-205'
),
'ENST00000517061' => array(
'start' => '115128218',
'end' => '115128373',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'ACA59.1-203'
),
'ENST00000535704' => array(
'start' => '115363629',
'end' => '115377931',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AP000462.2-001'
),
'ENST00000545593' => array(
'start' => '115333577',
'end' => '115340262',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AP000462.3-001'
),
'ENST00000539685' => array(
'start' => '115396820',
'end' => '115397577',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AP000462.1-002'
),
'ENST00000540545' => array(
'start' => '115396851',
'end' => '115397619',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AP000462.1-003'
),
'ENST00000543182' => array(
'start' => '115396756',
'end' => '115397658',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AP000462.1-001'
),
'ENST00000458951' => array(
'start' => '115627082',
'end' => '115627185',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'snoU13.1-233'
),
'ENST00000478870' => array(
'start' => '115951105',
'end' => '115951491',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AP000797.2-001'
),
'ENST00000475768' => array(
'start' => '115950196',
'end' => '115950801',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AP000797.1-001'
),
'ENST00000499809' => array(
'start' => '115754248',
'end' => '115760194',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00900-001'
),
'ENST00000501294' => array(
'start' => '115757451',
'end' => '115760627',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00900-002'
),
'ENST00000514294' => array(
'start' => '115757463',
'end' => '115760197',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00900-003'
),
'ENST00000535683' => array(
'start' => '115757920',
'end' => '115760200',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00900-004'
),
'ENST00000537070' => array(
'start' => '115757717',
'end' => '115760186',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00900-005'
),
'ENST00000602803' => array(
'start' => '115758276',
'end' => '115758853',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00900-006'
),
'ENST00000424313' => array(
'start' => '115628065',
'end' => '115629743',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AP000997.1-001'
),
'ENST00000306533' => array(
'start' => '115582297',
'end' => '115600339',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-136I14.5-001'
),
'ENST00000436610' => array(
'start' => '115578049',
'end' => '115578243',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-136I14.4-001'
),
'ENST00000544663' => array(
'start' => '115532322',
'end' => '115532953',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-136I14.2-001'
),
'ENST00000539305' => array(
'start' => '115659658',
'end' => '115843146',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AP000797.3-001'
),
'ENST00000537491' => array(
'start' => '115932774',
'end' => '115942995',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AP000797.4-001'
),
'ENST00000539222' => array(
'start' => '115932857',
'end' => '115940210',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AP000797.4-002'
),
'ENST00000537926' => array(
'start' => '115538869',
'end' => '115539384',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-136I14.3-001'
),
'ENST00000564619' => array(
'start' => '115638563',
'end' => '115646962',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AP000997.2-001'
),
'ENST00000623333' => array(
'start' => '115659168',
'end' => '115661417',
'transcript_biotype' => 'TEC',
'transcript_name' => 'AP000997.3-001'
),
'ENST00000623807' => array(
'start' => '115731942',
'end' => '115734742',
'transcript_biotype' => 'TEC',
'transcript_name' => 'CTC-774J1.1-001'
),
'ENSMUST00000034581' => array(
'start' => '47530373',
'end' => '47850390',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cadm1-006'
),
'ENSMUST00000085909' => array(
'start' => '47530257',
'end' => '47851029',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cadm1-002'
),
'ENSMUST00000114547' => array(
'start' => '47530257',
'end' => '47853380',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cadm1-003'
),
'ENSMUST00000114548' => array(
'start' => '47530173',
'end' => '47853385',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cadm1-001'
),
'ENSMUST00000124073' => array(
'start' => '47530352',
'end' => '47819080',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Cadm1-007'
),
'ENSMUST00000143026' => array(
'start' => '47530244',
'end' => '47857637',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cadm1-005'
),
'ENSMUST00000148925' => array(
'start' => '47530352',
'end' => '47792583',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Cadm1-009'
),
'ENSMUST00000151624' => array(
'start' => '47530373',
'end' => '47814054',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Cadm1-008'
),
'ENSMUST00000152459' => array(
'start' => '47530211',
'end' => '47850587',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cadm1-004'
),
'ENSMUST00000178065' => array(
'start' => '46998931',
'end' => '47003338',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm4791-201'
),
'ENSMUST00000179708' => array(
'start' => '47525616',
'end' => '47525722',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm22286-201'
),
'ENSMUST00000185568' => array(
'start' => '46913603',
'end' => '46927366',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP24-247B20.1-002'
),
'ENSMUST00000189828' => array(
'start' => '46913627',
'end' => '46922567',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP24-247B20.1-003'
),
'ENSMUST00000191603' => array(
'start' => '46913493',
'end' => '46927366',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP24-247B20.1-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007JB_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JB_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JB_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JB_0007' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JB_0009' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007JB_0003' => array(
'genes_in_region' => array(
'ENSG00000182985' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Kidney',
(int) 2 => 'Liver',
(int) 3 => 'Brain',
(int) 4 => 'Colon',
(int) 5 => 'Testis',
(int) 6 => 'Adipose',
(int) 7 => 'Bladder',
(int) 8 => 'Breast',
(int) 9 => 'Colon',
(int) 10 => 'Heart',
(int) 11 => 'Lung',
(int) 12 => 'Ovary',
(int) 13 => 'Placenta',
(int) 14 => 'Bladder',
(int) 15 => 'Heart',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Colon',
(int) 27 => 'Ovary',
(int) 28 => 'Breast',
(int) 29 => 'Heart',
(int) 30 => 'Liver',
(int) 31 => 'Ovary',
(int) 32 => 'Placenta',
(int) 33 => 'Testis',
(int) 34 => 'Brain',
(int) 35 => 'Colon',
(int) 36 => 'Heart',
(int) 37 => 'Kidney',
(int) 38 => 'Muscle',
(int) 39 => 'Kidney',
(int) 40 => 'Liver',
(int) 41 => 'Testis',
(int) 42 => 'Adipose',
(int) 43 => 'Adrenal',
(int) 44 => 'Bladder',
(int) 45 => 'Brain',
(int) 46 => 'Breast',
(int) 47 => 'Colon',
(int) 48 => 'Heart',
(int) 49 => 'Kidney',
(int) 50 => 'Liver',
(int) 51 => 'Lung',
(int) 52 => 'Muscle',
(int) 53 => 'Ovary',
(int) 54 => 'Placenta',
(int) 55 => 'Testis'
)
),
'CIL_0007JB_0004' => array(
'genes_in_region' => array(
'ENSG00000255580' => array(
[maximum depth reached]
),
'ENSG00000256972' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Heart',
(int) 4 => 'Liver',
(int) 5 => 'Adrenal',
(int) 6 => 'Kidney',
(int) 7 => 'Ovary',
(int) 8 => 'Testis'
)
),
'CIL_0007JB_0005' => array(
'genes_in_region' => array(
'ENSG00000255580' => array(
[maximum depth reached]
),
'ENSG00000256315' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Heart',
(int) 4 => 'Liver',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Bladder',
(int) 8 => 'Brain',
(int) 9 => 'Breast',
(int) 10 => 'Colon',
(int) 11 => 'Heart',
(int) 12 => 'Liver',
(int) 13 => 'Muscle',
(int) 14 => 'Ovary',
(int) 15 => 'Testis',
(int) 16 => 'Adrenal',
(int) 17 => 'Brain',
(int) 18 => 'Testis'
)
),
'CIL_0007JB_0007' => array(
'genes_in_region' => array(
'ENSG00000182985' => array(
[maximum depth reached]
),
'ENSG00000239600' => array(
[maximum depth reached]
),
'ENSG00000244259' => array(
[maximum depth reached]
),
'ENSG00000246100' => array(
[maximum depth reached]
),
'ENSG00000255599' => array(
[maximum depth reached]
),
'ENSG00000255689' => array(
[maximum depth reached]
),
'ENSG00000257067' => array(
[maximum depth reached]
),
'ENSG00000257087' => array(
[maximum depth reached]
),
'ENSG00000260254' => array(
[maximum depth reached]
),
'ENSG00000279771' => array(
[maximum depth reached]
),
'ENSG00000279818' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Kidney',
(int) 2 => 'Liver',
(int) 3 => 'Brain',
(int) 4 => 'Colon',
(int) 5 => 'Testis',
(int) 6 => 'Adipose',
(int) 7 => 'Bladder',
(int) 8 => 'Breast',
(int) 9 => 'Colon',
(int) 10 => 'Heart',
(int) 11 => 'Lung',
(int) 12 => 'Ovary',
(int) 13 => 'Placenta',
(int) 14 => 'Bladder',
(int) 15 => 'Heart',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Colon',
(int) 27 => 'Ovary',
(int) 28 => 'Breast',
(int) 29 => 'Heart',
(int) 30 => 'Liver',
(int) 31 => 'Ovary',
(int) 32 => 'Placenta',
(int) 33 => 'Testis',
(int) 34 => 'Brain',
(int) 35 => 'Colon',
(int) 36 => 'Heart',
(int) 37 => 'Kidney',
(int) 38 => 'Muscle',
(int) 39 => 'Kidney',
(int) 40 => 'Liver',
(int) 41 => 'Testis',
(int) 42 => 'Adipose',
(int) 43 => 'Adrenal',
(int) 44 => 'Bladder',
(int) 45 => 'Brain',
(int) 46 => 'Breast',
(int) 47 => 'Colon',
(int) 48 => 'Heart',
(int) 49 => 'Kidney',
(int) 50 => 'Liver',
(int) 51 => 'Lung',
(int) 52 => 'Muscle',
(int) 53 => 'Ovary',
(int) 54 => 'Placenta',
(int) 55 => 'Testis',
(int) 56 => 'Testis',
(int) 57 => 'Adipose',
(int) 58 => 'Adrenal',
(int) 59 => 'Breast',
(int) 60 => 'Colon',
(int) 61 => 'Heart',
(int) 62 => 'Kidney',
(int) 63 => 'Lung',
(int) 64 => 'Ovary',
(int) 65 => 'Testis',
(int) 66 => 'Adipose',
(int) 67 => 'Brain',
(int) 68 => 'Breast',
(int) 69 => 'Colon',
(int) 70 => 'Heart',
(int) 71 => 'Kidney',
(int) 72 => 'Liver',
(int) 73 => 'Lung',
(int) 74 => 'Muscle',
(int) 75 => 'Ovary',
(int) 76 => 'Placenta',
(int) 77 => 'Adipose',
(int) 78 => 'Brain',
(int) 79 => 'Lung',
(int) 80 => 'Ovary',
(int) 81 => 'Placenta',
(int) 82 => 'Brain',
(int) 83 => 'Breast',
(int) 84 => 'Colon',
(int) 85 => 'Heart',
(int) 86 => 'Kidney',
(int) 87 => 'Liver',
(int) 88 => 'Muscle',
(int) 89 => 'Ovary',
(int) 90 => 'Placenta',
(int) 91 => 'Testis',
(int) 92 => 'Breast',
(int) 93 => 'Colon',
(int) 94 => 'Ovary',
(int) 95 => 'Placenta',
(int) 96 => 'Testis',
(int) 97 => 'Brain',
(int) 98 => 'Breast',
(int) 99 => 'Colon',
(int) 100 => 'Heart',
(int) 101 => 'Kidney',
(int) 102 => 'Liver',
(int) 103 => 'Ovary',
(int) 104 => 'Placenta',
(int) 105 => 'Testis',
(int) 106 => 'Adrenal',
(int) 107 => 'Brain',
(int) 108 => 'Breast',
(int) 109 => 'Ovary',
(int) 110 => 'Testis',
(int) 111 => 'Ovary',
(int) 112 => 'Testis',
(int) 113 => 'Muscle',
(int) 114 => 'Brain',
(int) 115 => 'Heart',
(int) 116 => 'Kidney',
(int) 117 => 'Testis',
(int) 118 => 'Adrenal',
(int) 119 => 'Brain',
(int) 120 => 'Breast',
(int) 121 => 'Heart',
(int) 122 => 'Kidney',
(int) 123 => 'Liver',
(int) 124 => 'Lung',
(int) 125 => 'Muscle',
(int) 126 => 'Ovary',
(int) 127 => 'Testis',
(int) 128 => 'Adrenal',
(int) 129 => 'Brain',
(int) 130 => 'Breast',
(int) 131 => 'Heart',
(int) 132 => 'Kidney',
(int) 133 => 'Muscle',
(int) 134 => 'Ovary',
(int) 135 => 'Placenta',
(int) 136 => 'Testis'
)
),
'CIL_0007JB_0009' => array(
'genes_in_region' => array(
'ENSMUSG00000032076' => array(
[maximum depth reached]
),
'ENSMUSG00000094893' => array(
[maximum depth reached]
),
'ENSMUSG00000099696' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Liver',
(int) 7 => 'Lung',
(int) 8 => 'Muscle',
(int) 9 => 'Placenta',
(int) 10 => 'Testis',
(int) 11 => 'Adrenal',
(int) 12 => 'Breast',
(int) 13 => 'Colon',
(int) 14 => 'Kidney',
(int) 15 => 'Liver',
(int) 16 => 'Muscle',
(int) 17 => 'Ovary',
(int) 18 => 'Placenta',
(int) 19 => 'Testis',
(int) 20 => 'Adipose',
(int) 21 => 'Adrenal',
(int) 22 => 'Bladder',
(int) 23 => 'Breast',
(int) 24 => 'Colon',
(int) 25 => 'Heart',
(int) 26 => 'Kidney',
(int) 27 => 'Liver',
(int) 28 => 'Lung',
(int) 29 => 'Muscle',
(int) 30 => 'Ovary',
(int) 31 => 'Placenta',
(int) 32 => 'Brain',
(int) 33 => 'Colon',
(int) 34 => 'Muscle',
(int) 35 => 'Testis',
(int) 36 => 'Breast',
(int) 37 => 'Colon',
(int) 38 => 'Heart',
(int) 39 => 'Kidney',
(int) 40 => 'Liver',
(int) 41 => 'Ovary',
(int) 42 => 'Adrenal',
(int) 43 => 'Adipose',
(int) 44 => 'Adrenal',
(int) 45 => 'Breast',
(int) 46 => 'Colon',
(int) 47 => 'Heart',
(int) 48 => 'Liver',
(int) 49 => 'Ovary',
(int) 50 => 'Placenta',
(int) 51 => 'Testis',
(int) 52 => 'Heart',
(int) 53 => 'Muscle',
(int) 54 => 'Ovary',
(int) 55 => 'Placenta',
(int) 56 => 'Testis',
(int) 57 => 'Adipose',
(int) 58 => 'Brain',
(int) 59 => 'Lung',
(int) 60 => 'Ovary',
(int) 61 => 'Testis',
(int) 62 => 'Brain',
(int) 63 => 'Breast',
(int) 64 => 'Colon',
(int) 65 => 'Heart',
(int) 66 => 'Kidney',
(int) 67 => 'Liver',
(int) 68 => 'Muscle',
(int) 69 => 'Placenta',
(int) 70 => 'Testis',
(int) 71 => 'Adipose',
(int) 72 => 'Adrenal',
(int) 73 => 'Bladder',
(int) 74 => 'Brain',
(int) 75 => 'Breast',
(int) 76 => 'Heart',
(int) 77 => 'Kidney',
(int) 78 => 'Liver',
(int) 79 => 'Muscle',
(int) 80 => 'Ovary',
(int) 81 => 'Placenta',
(int) 82 => 'Testis',
(int) 83 => 'Bladder',
(int) 84 => 'Brain'
)
)
)
$gene_desc_arr = array(
'ENSG00000182985' => 'cell adhesion molecule 1',
'ENSG00000252870' => 'Small nucleolar RNA ACA59',
'ENSG00000255580' => null,
'ENSG00000256972' => null,
'ENSG00000256315' => null,
'ENSG00000239153' => 'Small nucleolar RNA U13',
'ENSG00000239600' => null,
'ENSG00000244259' => null,
'ENSG00000246100' => 'long intergenic non-protein coding RNA 900',
'ENSG00000255599' => null,
'ENSG00000255689' => null,
'ENSG00000255903' => null,
'ENSG00000256281' => null,
'ENSG00000256717' => null,
'ENSG00000257067' => null,
'ENSG00000257087' => null,
'ENSG00000260254' => null,
'ENSG00000279771' => null,
'ENSG00000279818' => null,
'ENSMUSG00000032076' => 'cell adhesion molecule 1',
'ENSMUSG00000094893' => 'predicted gene 4791',
'ENSMUSG00000094895' => 'predicted gene, 22286',
'ENSMUSG00000099696' => 'RIKEN cDNA 2900052N01 gene'
)
$gene_name_arr = array(
'ENSG00000182985' => 'CADM1',
'ENSG00000252870' => 'ACA59',
'ENSG00000255580' => 'AP000462.2',
'ENSG00000256972' => 'AP000462.3',
'ENSG00000256315' => 'AP000462.1',
'ENSG00000239153' => 'snoU13',
'ENSG00000239600' => 'AP000797.2',
'ENSG00000244259' => 'AP000797.1',
'ENSG00000246100' => 'LINC00900',
'ENSG00000255599' => 'AP000997.1',
'ENSG00000255689' => 'RP11-136I14.5',
'ENSG00000255903' => 'RP11-136I14.4',
'ENSG00000256281' => 'RP11-136I14.2',
'ENSG00000256717' => 'AP000797.3',
'ENSG00000257067' => 'AP000797.4',
'ENSG00000257087' => 'RP11-136I14.3',
'ENSG00000260254' => 'AP000997.2',
'ENSG00000279771' => 'AP000997.3',
'ENSG00000279818' => 'CTC-774J1.1',
'ENSMUSG00000032076' => 'Cadm1',
'ENSMUSG00000094893' => 'Gm4791',
'ENSMUSG00000094895' => 'Gm22286',
'ENSMUSG00000099696' => 'RP24-247B20.1'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JB_0001',
'tax_id' => '9606',
'chromosome' => '11',
'seq_start' => '114847802',
'seq_end' => '114876827',
'region_length' => '29025',
'region_type' => 'UCNEbase',
'el_id' => 'CADM1'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JB_0002',
'tax_id' => '9606',
'chromosome' => '11',
'seq_start' => '114876828',
'seq_end' => '114879627',
'region_length' => '2799',
'region_type' => 'UCNEbase',
'el_id' => 'CADM1'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JB_0003',
'tax_id' => '9606',
'chromosome' => '11',
'seq_start' => '114879628',
'seq_end' => '115317708',
'region_length' => '438080',
'region_type' => 'UCNEbase',
'el_id' => 'CADM1'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JB_0004',
'tax_id' => '9606',
'chromosome' => '11',
'seq_start' => '115317709',
'seq_end' => '115366061',
'region_length' => '48352',
'region_type' => 'UCNEbase',
'el_id' => 'CADM1'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JB_0005',
'tax_id' => '9606',
'chromosome' => '11',
'seq_start' => '115366062',
'seq_end' => '115420641',
'region_length' => '54579',
'region_type' => 'UCNEbase',
'el_id' => 'CADM1'
)
),
(int) 5 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JB_0006',
'tax_id' => '9606',
'chromosome' => '11',
'seq_start' => '115420641',
'seq_end' => '115489206',
'region_length' => '68565',
'region_type' => 'UCNEbase',
'el_id' => 'CADM1'
)
),
(int) 6 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JB_0007',
'tax_id' => '9606',
'chromosome' => '11',
'seq_start' => '115489207',
'seq_end' => '116083402',
'region_length' => '594195',
'region_type' => 'UCNEbase',
'el_id' => 'CADM1'
)
),
(int) 7 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JB_0008',
'tax_id' => '9606',
'chromosome' => '11',
'seq_start' => '116083403',
'seq_end' => '116129738',
'region_length' => '46335',
'region_type' => 'UCNEbase',
'el_id' => 'CADM1'
)
),
(int) 8 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JB_0009',
'tax_id' => '10090',
'chromosome' => '9',
'seq_start' => '46899838',
'seq_end' => '48183264',
'region_length' => '1283426',
'region_type' => 'UCNEbase',
'el_id' => 'CADM1'
)
),
(int) 9 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JB_000A',
'tax_id' => '7955',
'chromosome' => '21',
'seq_start' => '23658701',
'seq_end' => '23686184',
'region_length' => '27483',
'region_type' => 'UCNEbase',
'el_id' => 'CADM1'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 12 => 'Adrenal',
(int) 28 => 'Bladder',
(int) 40 => 'Brain',
(int) 69 => 'Breast',
(int) 95 => 'Colon',
(int) 118 => 'Heart',
(int) 148 => 'Kidney',
(int) 171 => 'Liver',
(int) 195 => 'Lung',
(int) 208 => 'Muscle',
(int) 225 => 'Ovary',
(int) 254 => 'Placenta',
(int) 275 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 91
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000331581' => array(
'start' => '115176295',
'end' => '115504565',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-003'
),
'ENST00000441886' => array(
'start' => '115190609',
'end' => '115214694',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CADM1-017'
),
'ENST00000452722' => array(
'start' => '115169236',
'end' => '115504415',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-001'
),
'ENST00000536727' => array(
'start' => '115174307',
'end' => '115504415',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-006'
),
'ENST00000536781' => array(
'start' => '115399084',
'end' => '115504415',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CADM1-012'
),
'ENST00000537058' => array(
'start' => '115174307',
'end' => '115504415',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-005'
),
'ENST00000537140' => array(
'start' => '115169236',
'end' => '115504523',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CADM1-004'
),
'ENST00000540373' => array(
'start' => '115214699',
'end' => '115218144',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CADM1-016'
),
'ENST00000540852' => array(
'start' => '115176408',
'end' => '115191046',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CADM1-018'
),
'ENST00000540951' => array(
'start' => '115231440',
'end' => '115504415',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'CADM1-021'
),
'ENST00000541434' => array(
'start' => '115214490',
'end' => '115504394',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CADM1-007'
),
'ENST00000542447' => array(
'start' => '115173625',
'end' => '115504523',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-002'
),
'ENST00000542450' => array(
'start' => '115217940',
'end' => '115240980',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-015'
),
'ENST00000543249' => array(
'start' => '115229220',
'end' => '115504957',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-010'
),
'ENST00000543375' => array(
'start' => '115176330',
'end' => '115194110',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CADM1-020'
),
'ENST00000543540' => array(
'start' => '115229156',
'end' => '115287477',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-013'
),
'ENST00000545094' => array(
'start' => '115229189',
'end' => '115256891',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-014'
),
'ENST00000545380' => array(
'start' => '115175341',
'end' => '115504389',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-008'
),
'ENST00000545960' => array(
'start' => '115169218',
'end' => '115198440',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CADM1-011'
),
'ENST00000546000' => array(
'start' => '115176327',
'end' => '115179111',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CADM1-019'
),
'ENST00000612235' => array(
'start' => '115169589',
'end' => '115240422',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-201'
),
'ENST00000612471' => array(
'start' => '115173626',
'end' => '115240421',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-202'
),
'ENST00000616271' => array(
'start' => '115176467',
'end' => '115240421',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-203'
),
'ENST00000621043' => array(
'start' => '115176467',
'end' => '115240421',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-204'
),
'ENST00000621709' => array(
'start' => '115173626',
'end' => '115240421',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-205'
),
'ENST00000517061' => array(
'start' => '115128218',
'end' => '115128373',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'ACA59.1-203'
),
'ENST00000535704' => array(
'start' => '115363629',
'end' => '115377931',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AP000462.2-001'
),
'ENST00000545593' => array(
'start' => '115333577',
'end' => '115340262',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AP000462.3-001'
),
'ENST00000539685' => array(
'start' => '115396820',
'end' => '115397577',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AP000462.1-002'
),
'ENST00000540545' => array(
'start' => '115396851',
'end' => '115397619',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AP000462.1-003'
),
'ENST00000543182' => array(
'start' => '115396756',
'end' => '115397658',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AP000462.1-001'
),
'ENST00000458951' => array(
'start' => '115627082',
'end' => '115627185',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'snoU13.1-233'
),
'ENST00000478870' => array(
'start' => '115951105',
'end' => '115951491',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AP000797.2-001'
),
'ENST00000475768' => array(
'start' => '115950196',
'end' => '115950801',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AP000797.1-001'
),
'ENST00000499809' => array(
'start' => '115754248',
'end' => '115760194',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00900-001'
),
'ENST00000501294' => array(
'start' => '115757451',
'end' => '115760627',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00900-002'
),
'ENST00000514294' => array(
'start' => '115757463',
'end' => '115760197',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00900-003'
),
'ENST00000535683' => array(
'start' => '115757920',
'end' => '115760200',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00900-004'
),
'ENST00000537070' => array(
'start' => '115757717',
'end' => '115760186',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00900-005'
),
'ENST00000602803' => array(
'start' => '115758276',
'end' => '115758853',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00900-006'
),
'ENST00000424313' => array(
'start' => '115628065',
'end' => '115629743',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AP000997.1-001'
),
'ENST00000306533' => array(
'start' => '115582297',
'end' => '115600339',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-136I14.5-001'
),
'ENST00000436610' => array(
'start' => '115578049',
'end' => '115578243',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-136I14.4-001'
),
'ENST00000544663' => array(
'start' => '115532322',
'end' => '115532953',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-136I14.2-001'
),
'ENST00000539305' => array(
'start' => '115659658',
'end' => '115843146',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AP000797.3-001'
),
'ENST00000537491' => array(
'start' => '115932774',
'end' => '115942995',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AP000797.4-001'
),
'ENST00000539222' => array(
'start' => '115932857',
'end' => '115940210',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AP000797.4-002'
),
'ENST00000537926' => array(
'start' => '115538869',
'end' => '115539384',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-136I14.3-001'
),
'ENST00000564619' => array(
'start' => '115638563',
'end' => '115646962',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AP000997.2-001'
),
'ENST00000623333' => array(
'start' => '115659168',
'end' => '115661417',
'transcript_biotype' => 'TEC',
'transcript_name' => 'AP000997.3-001'
),
'ENST00000623807' => array(
'start' => '115731942',
'end' => '115734742',
'transcript_biotype' => 'TEC',
'transcript_name' => 'CTC-774J1.1-001'
),
'ENSMUST00000034581' => array(
'start' => '47530373',
'end' => '47850390',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cadm1-006'
),
'ENSMUST00000085909' => array(
'start' => '47530257',
'end' => '47851029',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cadm1-002'
),
'ENSMUST00000114547' => array(
'start' => '47530257',
'end' => '47853380',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cadm1-003'
),
'ENSMUST00000114548' => array(
'start' => '47530173',
'end' => '47853385',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cadm1-001'
),
'ENSMUST00000124073' => array(
'start' => '47530352',
'end' => '47819080',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Cadm1-007'
),
'ENSMUST00000143026' => array(
'start' => '47530244',
'end' => '47857637',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cadm1-005'
),
'ENSMUST00000148925' => array(
'start' => '47530352',
'end' => '47792583',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Cadm1-009'
),
'ENSMUST00000151624' => array(
'start' => '47530373',
'end' => '47814054',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Cadm1-008'
),
'ENSMUST00000152459' => array(
'start' => '47530211',
'end' => '47850587',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cadm1-004'
),
'ENSMUST00000178065' => array(
'start' => '46998931',
'end' => '47003338',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm4791-201'
),
'ENSMUST00000179708' => array(
'start' => '47525616',
'end' => '47525722',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm22286-201'
),
'ENSMUST00000185568' => array(
'start' => '46913603',
'end' => '46927366',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP24-247B20.1-002'
),
'ENSMUST00000189828' => array(
'start' => '46913627',
'end' => '46922567',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP24-247B20.1-003'
),
'ENSMUST00000191603' => array(
'start' => '46913493',
'end' => '46927366',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP24-247B20.1-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007JB_0003' => array(
'genes_in_region' => array(
'ENSG00000182985' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Kidney',
(int) 2 => 'Liver',
(int) 3 => 'Brain',
(int) 4 => 'Colon',
(int) 5 => 'Testis',
(int) 6 => 'Adipose',
(int) 7 => 'Bladder',
(int) 8 => 'Breast',
(int) 9 => 'Colon',
(int) 10 => 'Heart',
(int) 11 => 'Lung',
(int) 12 => 'Ovary',
(int) 13 => 'Placenta',
(int) 14 => 'Bladder',
(int) 15 => 'Heart',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Colon',
(int) 27 => 'Ovary',
(int) 28 => 'Breast',
(int) 29 => 'Heart',
(int) 30 => 'Liver',
(int) 31 => 'Ovary',
(int) 32 => 'Placenta',
(int) 33 => 'Testis',
(int) 34 => 'Brain',
(int) 35 => 'Colon',
(int) 36 => 'Heart',
(int) 37 => 'Kidney',
(int) 38 => 'Muscle',
(int) 39 => 'Kidney',
(int) 40 => 'Liver',
(int) 41 => 'Testis',
(int) 42 => 'Adipose',
(int) 43 => 'Adrenal',
(int) 44 => 'Bladder',
(int) 45 => 'Brain',
(int) 46 => 'Breast',
(int) 47 => 'Colon',
(int) 48 => 'Heart',
(int) 49 => 'Kidney',
(int) 50 => 'Liver',
(int) 51 => 'Lung',
(int) 52 => 'Muscle',
(int) 53 => 'Ovary',
(int) 54 => 'Placenta',
(int) 55 => 'Testis'
)
),
'CIL_0007JB_0004' => array(
'genes_in_region' => array(
'ENSG00000255580' => array(
[maximum depth reached]
),
'ENSG00000256972' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Heart',
(int) 4 => 'Liver',
(int) 5 => 'Adrenal',
(int) 6 => 'Kidney',
(int) 7 => 'Ovary',
(int) 8 => 'Testis'
)
),
'CIL_0007JB_0005' => array(
'genes_in_region' => array(
'ENSG00000255580' => array(
[maximum depth reached]
),
'ENSG00000256315' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Heart',
(int) 4 => 'Liver',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Bladder',
(int) 8 => 'Brain',
(int) 9 => 'Breast',
(int) 10 => 'Colon',
(int) 11 => 'Heart',
(int) 12 => 'Liver',
(int) 13 => 'Muscle',
(int) 14 => 'Ovary',
(int) 15 => 'Testis',
(int) 16 => 'Adrenal',
(int) 17 => 'Brain',
(int) 18 => 'Testis'
)
),
'CIL_0007JB_0007' => array(
'genes_in_region' => array(
'ENSG00000182985' => array(
[maximum depth reached]
),
'ENSG00000239600' => array(
[maximum depth reached]
),
'ENSG00000244259' => array(
[maximum depth reached]
),
'ENSG00000246100' => array(
[maximum depth reached]
),
'ENSG00000255599' => array(
[maximum depth reached]
),
'ENSG00000255689' => array(
[maximum depth reached]
),
'ENSG00000257067' => array(
[maximum depth reached]
),
'ENSG00000257087' => array(
[maximum depth reached]
),
'ENSG00000260254' => array(
[maximum depth reached]
),
'ENSG00000279771' => array(
[maximum depth reached]
),
'ENSG00000279818' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Kidney',
(int) 2 => 'Liver',
(int) 3 => 'Brain',
(int) 4 => 'Colon',
(int) 5 => 'Testis',
(int) 6 => 'Adipose',
(int) 7 => 'Bladder',
(int) 8 => 'Breast',
(int) 9 => 'Colon',
(int) 10 => 'Heart',
(int) 11 => 'Lung',
(int) 12 => 'Ovary',
(int) 13 => 'Placenta',
(int) 14 => 'Bladder',
(int) 15 => 'Heart',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Colon',
(int) 27 => 'Ovary',
(int) 28 => 'Breast',
(int) 29 => 'Heart',
(int) 30 => 'Liver',
(int) 31 => 'Ovary',
(int) 32 => 'Placenta',
(int) 33 => 'Testis',
(int) 34 => 'Brain',
(int) 35 => 'Colon',
(int) 36 => 'Heart',
(int) 37 => 'Kidney',
(int) 38 => 'Muscle',
(int) 39 => 'Kidney',
(int) 40 => 'Liver',
(int) 41 => 'Testis',
(int) 42 => 'Adipose',
(int) 43 => 'Adrenal',
(int) 44 => 'Bladder',
(int) 45 => 'Brain',
(int) 46 => 'Breast',
(int) 47 => 'Colon',
(int) 48 => 'Heart',
(int) 49 => 'Kidney',
(int) 50 => 'Liver',
(int) 51 => 'Lung',
(int) 52 => 'Muscle',
(int) 53 => 'Ovary',
(int) 54 => 'Placenta',
(int) 55 => 'Testis',
(int) 56 => 'Testis',
(int) 57 => 'Adipose',
(int) 58 => 'Adrenal',
(int) 59 => 'Breast',
(int) 60 => 'Colon',
(int) 61 => 'Heart',
(int) 62 => 'Kidney',
(int) 63 => 'Lung',
(int) 64 => 'Ovary',
(int) 65 => 'Testis',
(int) 66 => 'Adipose',
(int) 67 => 'Brain',
(int) 68 => 'Breast',
(int) 69 => 'Colon',
(int) 70 => 'Heart',
(int) 71 => 'Kidney',
(int) 72 => 'Liver',
(int) 73 => 'Lung',
(int) 74 => 'Muscle',
(int) 75 => 'Ovary',
(int) 76 => 'Placenta',
(int) 77 => 'Adipose',
(int) 78 => 'Brain',
(int) 79 => 'Lung',
(int) 80 => 'Ovary',
(int) 81 => 'Placenta',
(int) 82 => 'Brain',
(int) 83 => 'Breast',
(int) 84 => 'Colon',
(int) 85 => 'Heart',
(int) 86 => 'Kidney',
(int) 87 => 'Liver',
(int) 88 => 'Muscle',
(int) 89 => 'Ovary',
(int) 90 => 'Placenta',
(int) 91 => 'Testis',
(int) 92 => 'Breast',
(int) 93 => 'Colon',
(int) 94 => 'Ovary',
(int) 95 => 'Placenta',
(int) 96 => 'Testis',
(int) 97 => 'Brain',
(int) 98 => 'Breast',
(int) 99 => 'Colon',
(int) 100 => 'Heart',
(int) 101 => 'Kidney',
(int) 102 => 'Liver',
(int) 103 => 'Ovary',
(int) 104 => 'Placenta',
(int) 105 => 'Testis',
(int) 106 => 'Adrenal',
(int) 107 => 'Brain',
(int) 108 => 'Breast',
(int) 109 => 'Ovary',
(int) 110 => 'Testis',
(int) 111 => 'Ovary',
(int) 112 => 'Testis',
(int) 113 => 'Muscle',
(int) 114 => 'Brain',
(int) 115 => 'Heart',
(int) 116 => 'Kidney',
(int) 117 => 'Testis',
(int) 118 => 'Adrenal',
(int) 119 => 'Brain',
(int) 120 => 'Breast',
(int) 121 => 'Heart',
(int) 122 => 'Kidney',
(int) 123 => 'Liver',
(int) 124 => 'Lung',
(int) 125 => 'Muscle',
(int) 126 => 'Ovary',
(int) 127 => 'Testis',
(int) 128 => 'Adrenal',
(int) 129 => 'Brain',
(int) 130 => 'Breast',
(int) 131 => 'Heart',
(int) 132 => 'Kidney',
(int) 133 => 'Muscle',
(int) 134 => 'Ovary',
(int) 135 => 'Placenta',
(int) 136 => 'Testis'
)
),
'CIL_0007JB_0009' => array(
'genes_in_region' => array(
'ENSMUSG00000032076' => array(
[maximum depth reached]
),
'ENSMUSG00000094893' => array(
[maximum depth reached]
),
'ENSMUSG00000099696' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Liver',
(int) 7 => 'Lung',
(int) 8 => 'Muscle',
(int) 9 => 'Placenta',
(int) 10 => 'Testis',
(int) 11 => 'Adrenal',
(int) 12 => 'Breast',
(int) 13 => 'Colon',
(int) 14 => 'Kidney',
(int) 15 => 'Liver',
(int) 16 => 'Muscle',
(int) 17 => 'Ovary',
(int) 18 => 'Placenta',
(int) 19 => 'Testis',
(int) 20 => 'Adipose',
(int) 21 => 'Adrenal',
(int) 22 => 'Bladder',
(int) 23 => 'Breast',
(int) 24 => 'Colon',
(int) 25 => 'Heart',
(int) 26 => 'Kidney',
(int) 27 => 'Liver',
(int) 28 => 'Lung',
(int) 29 => 'Muscle',
(int) 30 => 'Ovary',
(int) 31 => 'Placenta',
(int) 32 => 'Brain',
(int) 33 => 'Colon',
(int) 34 => 'Muscle',
(int) 35 => 'Testis',
(int) 36 => 'Breast',
(int) 37 => 'Colon',
(int) 38 => 'Heart',
(int) 39 => 'Kidney',
(int) 40 => 'Liver',
(int) 41 => 'Ovary',
(int) 42 => 'Adrenal',
(int) 43 => 'Adipose',
(int) 44 => 'Adrenal',
(int) 45 => 'Breast',
(int) 46 => 'Colon',
(int) 47 => 'Heart',
(int) 48 => 'Liver',
(int) 49 => 'Ovary',
(int) 50 => 'Placenta',
(int) 51 => 'Testis',
(int) 52 => 'Heart',
(int) 53 => 'Muscle',
(int) 54 => 'Ovary',
(int) 55 => 'Placenta',
(int) 56 => 'Testis',
(int) 57 => 'Adipose',
(int) 58 => 'Brain',
(int) 59 => 'Lung',
(int) 60 => 'Ovary',
(int) 61 => 'Testis',
(int) 62 => 'Brain',
(int) 63 => 'Breast',
(int) 64 => 'Colon',
(int) 65 => 'Heart',
(int) 66 => 'Kidney',
(int) 67 => 'Liver',
(int) 68 => 'Muscle',
(int) 69 => 'Placenta',
(int) 70 => 'Testis',
(int) 71 => 'Adipose',
(int) 72 => 'Adrenal',
(int) 73 => 'Bladder',
(int) 74 => 'Brain',
(int) 75 => 'Breast',
(int) 76 => 'Heart',
(int) 77 => 'Kidney',
(int) 78 => 'Liver',
(int) 79 => 'Muscle',
(int) 80 => 'Ovary',
(int) 81 => 'Placenta',
(int) 82 => 'Testis',
(int) 83 => 'Bladder',
(int) 84 => 'Brain'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JB_000A',
'tax_id' => '7955',
'chromosome' => '21',
'seq_start' => '23658701',
'seq_end' => '23686184',
'region_length' => '27483',
'region_type' => 'UCNEbase',
'el_id' => 'CADM1'
)
)
$gene_el = array(
'ENSMUST00000185568' => array(
'Brain' => array(
'average_FPKM' => '0.807',
'stddev_FPKM' => '0.77'
),
'Breast' => array(
'average_FPKM' => '0.166',
'stddev_FPKM' => '0.04'
),
'Colon' => array(
'average_FPKM' => '0.077',
'stddev_FPKM' => '0.02'
),
'Heart' => array(
'average_FPKM' => '0.029',
'stddev_FPKM' => '0.00'
),
'Kidney' => array(
'average_FPKM' => '0.078',
'stddev_FPKM' => '0.01'
),
'Liver' => array(
'average_FPKM' => '0.012',
'stddev_FPKM' => '0.01'
),
'Muscle' => array(
'average_FPKM' => '0.018',
'stddev_FPKM' => '0.00'
),
'Placenta' => array(
'average_FPKM' => '0.002',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.217',
'stddev_FPKM' => '0.12'
)
),
'ENSMUST00000189828' => array(
'Adipose' => array(
'average_FPKM' => '0.019',
'stddev_FPKM' => '0.00'
),
'Adrenal' => array(
'average_FPKM' => '0.114',
'stddev_FPKM' => '0.01'
),
'Bladder' => array(
'average_FPKM' => '0.034',
'stddev_FPKM' => '0.01'
),
'Brain' => array(
'average_FPKM' => '1.151',
'stddev_FPKM' => '1.59'
),
'Breast' => array(
'average_FPKM' => '0.347',
'stddev_FPKM' => '0.11'
),
'Heart' => array(
'average_FPKM' => '0.057',
'stddev_FPKM' => '0.01'
),
'Kidney' => array(
'average_FPKM' => '0.039',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.004',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '0.043',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.194',
'stddev_FPKM' => '0.00'
),
'Placenta' => array(
'average_FPKM' => '0.026',
'stddev_FPKM' => '0.02'
),
'Testis' => array(
'average_FPKM' => '0.213',
'stddev_FPKM' => '0.09'
)
),
'ENSMUST00000191603' => array(
'Bladder' => array(
'average_FPKM' => '0.013',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.026',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSMUSG00000099696'
$is_first = false
$tran_el = array(
'Bladder' => array(
'average_FPKM' => '0.013',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.026',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENSMUST00000191603'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007JB_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JB_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JB_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JB_0007' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JB_0009' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000182985' => 'cell adhesion molecule 1',
'ENSG00000252870' => 'Small nucleolar RNA ACA59',
'ENSG00000255580' => null,
'ENSG00000256972' => null,
'ENSG00000256315' => null,
'ENSG00000239153' => 'Small nucleolar RNA U13',
'ENSG00000239600' => null,
'ENSG00000244259' => null,
'ENSG00000246100' => 'long intergenic non-protein coding RNA 900',
'ENSG00000255599' => null,
'ENSG00000255689' => null,
'ENSG00000255903' => null,
'ENSG00000256281' => null,
'ENSG00000256717' => null,
'ENSG00000257067' => null,
'ENSG00000257087' => null,
'ENSG00000260254' => null,
'ENSG00000279771' => null,
'ENSG00000279818' => null,
'ENSMUSG00000032076' => 'cell adhesion molecule 1',
'ENSMUSG00000094893' => 'predicted gene 4791',
'ENSMUSG00000094895' => 'predicted gene, 22286',
'ENSMUSG00000099696' => 'RIKEN cDNA 2900052N01 gene'
),
'gene_name_arr' => array(
'ENSG00000182985' => 'CADM1',
'ENSG00000252870' => 'ACA59',
'ENSG00000255580' => 'AP000462.2',
'ENSG00000256972' => 'AP000462.3',
'ENSG00000256315' => 'AP000462.1',
'ENSG00000239153' => 'snoU13',
'ENSG00000239600' => 'AP000797.2',
'ENSG00000244259' => 'AP000797.1',
'ENSG00000246100' => 'LINC00900',
'ENSG00000255599' => 'AP000997.1',
'ENSG00000255689' => 'RP11-136I14.5',
'ENSG00000255903' => 'RP11-136I14.4',
'ENSG00000256281' => 'RP11-136I14.2',
'ENSG00000256717' => 'AP000797.3',
'ENSG00000257067' => 'AP000797.4',
'ENSG00000257087' => 'RP11-136I14.3',
'ENSG00000260254' => 'AP000997.2',
'ENSG00000279771' => 'AP000997.3',
'ENSG00000279818' => 'CTC-774J1.1',
'ENSMUSG00000032076' => 'Cadm1',
'ENSMUSG00000094893' => 'Gm4791',
'ENSMUSG00000094895' => 'Gm22286',
'ENSMUSG00000099696' => 'RP24-247B20.1'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 5 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 6 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 7 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 8 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 9 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 12 => 'Adrenal',
(int) 28 => 'Bladder',
(int) 40 => 'Brain',
(int) 69 => 'Breast',
(int) 95 => 'Colon',
(int) 118 => 'Heart',
(int) 148 => 'Kidney',
(int) 171 => 'Liver',
(int) 195 => 'Lung',
(int) 208 => 'Muscle',
(int) 225 => 'Ovary',
(int) 254 => 'Placenta',
(int) 275 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 91,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000331581' => array(
'start' => '115176295',
'end' => '115504565',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-003'
),
'ENST00000441886' => array(
'start' => '115190609',
'end' => '115214694',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CADM1-017'
),
'ENST00000452722' => array(
'start' => '115169236',
'end' => '115504415',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-001'
),
'ENST00000536727' => array(
'start' => '115174307',
'end' => '115504415',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-006'
),
'ENST00000536781' => array(
'start' => '115399084',
'end' => '115504415',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CADM1-012'
),
'ENST00000537058' => array(
'start' => '115174307',
'end' => '115504415',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-005'
),
'ENST00000537140' => array(
'start' => '115169236',
'end' => '115504523',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CADM1-004'
),
'ENST00000540373' => array(
'start' => '115214699',
'end' => '115218144',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CADM1-016'
),
'ENST00000540852' => array(
'start' => '115176408',
'end' => '115191046',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CADM1-018'
),
'ENST00000540951' => array(
'start' => '115231440',
'end' => '115504415',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'CADM1-021'
),
'ENST00000541434' => array(
'start' => '115214490',
'end' => '115504394',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CADM1-007'
),
'ENST00000542447' => array(
'start' => '115173625',
'end' => '115504523',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-002'
),
'ENST00000542450' => array(
'start' => '115217940',
'end' => '115240980',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-015'
),
'ENST00000543249' => array(
'start' => '115229220',
'end' => '115504957',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-010'
),
'ENST00000543375' => array(
'start' => '115176330',
'end' => '115194110',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CADM1-020'
),
'ENST00000543540' => array(
'start' => '115229156',
'end' => '115287477',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-013'
),
'ENST00000545094' => array(
'start' => '115229189',
'end' => '115256891',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-014'
),
'ENST00000545380' => array(
'start' => '115175341',
'end' => '115504389',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-008'
),
'ENST00000545960' => array(
'start' => '115169218',
'end' => '115198440',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CADM1-011'
),
'ENST00000546000' => array(
'start' => '115176327',
'end' => '115179111',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CADM1-019'
),
'ENST00000612235' => array(
'start' => '115169589',
'end' => '115240422',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-201'
),
'ENST00000612471' => array(
'start' => '115173626',
'end' => '115240421',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-202'
),
'ENST00000616271' => array(
'start' => '115176467',
'end' => '115240421',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-203'
),
'ENST00000621043' => array(
'start' => '115176467',
'end' => '115240421',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-204'
),
'ENST00000621709' => array(
'start' => '115173626',
'end' => '115240421',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-205'
),
'ENST00000517061' => array(
'start' => '115128218',
'end' => '115128373',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'ACA59.1-203'
),
'ENST00000535704' => array(
'start' => '115363629',
'end' => '115377931',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AP000462.2-001'
),
'ENST00000545593' => array(
'start' => '115333577',
'end' => '115340262',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AP000462.3-001'
),
'ENST00000539685' => array(
'start' => '115396820',
'end' => '115397577',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AP000462.1-002'
),
'ENST00000540545' => array(
'start' => '115396851',
'end' => '115397619',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AP000462.1-003'
),
'ENST00000543182' => array(
'start' => '115396756',
'end' => '115397658',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AP000462.1-001'
),
'ENST00000458951' => array(
'start' => '115627082',
'end' => '115627185',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'snoU13.1-233'
),
'ENST00000478870' => array(
'start' => '115951105',
'end' => '115951491',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AP000797.2-001'
),
'ENST00000475768' => array(
'start' => '115950196',
'end' => '115950801',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AP000797.1-001'
),
'ENST00000499809' => array(
'start' => '115754248',
'end' => '115760194',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00900-001'
),
'ENST00000501294' => array(
'start' => '115757451',
'end' => '115760627',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00900-002'
),
'ENST00000514294' => array(
'start' => '115757463',
'end' => '115760197',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00900-003'
),
'ENST00000535683' => array(
'start' => '115757920',
'end' => '115760200',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00900-004'
),
'ENST00000537070' => array(
'start' => '115757717',
'end' => '115760186',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00900-005'
),
'ENST00000602803' => array(
'start' => '115758276',
'end' => '115758853',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00900-006'
),
'ENST00000424313' => array(
'start' => '115628065',
'end' => '115629743',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AP000997.1-001'
),
'ENST00000306533' => array(
'start' => '115582297',
'end' => '115600339',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-136I14.5-001'
),
'ENST00000436610' => array(
'start' => '115578049',
'end' => '115578243',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-136I14.4-001'
),
'ENST00000544663' => array(
'start' => '115532322',
'end' => '115532953',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-136I14.2-001'
),
'ENST00000539305' => array(
'start' => '115659658',
'end' => '115843146',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AP000797.3-001'
),
'ENST00000537491' => array(
'start' => '115932774',
'end' => '115942995',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AP000797.4-001'
),
'ENST00000539222' => array(
'start' => '115932857',
'end' => '115940210',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AP000797.4-002'
),
'ENST00000537926' => array(
'start' => '115538869',
'end' => '115539384',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-136I14.3-001'
),
'ENST00000564619' => array(
'start' => '115638563',
'end' => '115646962',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AP000997.2-001'
),
'ENST00000623333' => array(
'start' => '115659168',
'end' => '115661417',
'transcript_biotype' => 'TEC',
'transcript_name' => 'AP000997.3-001'
),
'ENST00000623807' => array(
'start' => '115731942',
'end' => '115734742',
'transcript_biotype' => 'TEC',
'transcript_name' => 'CTC-774J1.1-001'
),
'ENSMUST00000034581' => array(
'start' => '47530373',
'end' => '47850390',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cadm1-006'
),
'ENSMUST00000085909' => array(
'start' => '47530257',
'end' => '47851029',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cadm1-002'
),
'ENSMUST00000114547' => array(
'start' => '47530257',
'end' => '47853380',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cadm1-003'
),
'ENSMUST00000114548' => array(
'start' => '47530173',
'end' => '47853385',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cadm1-001'
),
'ENSMUST00000124073' => array(
'start' => '47530352',
'end' => '47819080',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Cadm1-007'
),
'ENSMUST00000143026' => array(
'start' => '47530244',
'end' => '47857637',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cadm1-005'
),
'ENSMUST00000148925' => array(
'start' => '47530352',
'end' => '47792583',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Cadm1-009'
),
'ENSMUST00000151624' => array(
'start' => '47530373',
'end' => '47814054',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Cadm1-008'
),
'ENSMUST00000152459' => array(
'start' => '47530211',
'end' => '47850587',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cadm1-004'
),
'ENSMUST00000178065' => array(
'start' => '46998931',
'end' => '47003338',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm4791-201'
),
'ENSMUST00000179708' => array(
'start' => '47525616',
'end' => '47525722',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm22286-201'
),
'ENSMUST00000185568' => array(
'start' => '46913603',
'end' => '46927366',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP24-247B20.1-002'
),
'ENSMUST00000189828' => array(
'start' => '46913627',
'end' => '46922567',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP24-247B20.1-003'
),
'ENSMUST00000191603' => array(
'start' => '46913493',
'end' => '46927366',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP24-247B20.1-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007JB_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JB_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JB_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JB_0007' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JB_0009' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007JB_0003' => array(
'genes_in_region' => array(
'ENSG00000182985' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Kidney',
(int) 2 => 'Liver',
(int) 3 => 'Brain',
(int) 4 => 'Colon',
(int) 5 => 'Testis',
(int) 6 => 'Adipose',
(int) 7 => 'Bladder',
(int) 8 => 'Breast',
(int) 9 => 'Colon',
(int) 10 => 'Heart',
(int) 11 => 'Lung',
(int) 12 => 'Ovary',
(int) 13 => 'Placenta',
(int) 14 => 'Bladder',
(int) 15 => 'Heart',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Colon',
(int) 27 => 'Ovary',
(int) 28 => 'Breast',
(int) 29 => 'Heart',
(int) 30 => 'Liver',
(int) 31 => 'Ovary',
(int) 32 => 'Placenta',
(int) 33 => 'Testis',
(int) 34 => 'Brain',
(int) 35 => 'Colon',
(int) 36 => 'Heart',
(int) 37 => 'Kidney',
(int) 38 => 'Muscle',
(int) 39 => 'Kidney',
(int) 40 => 'Liver',
(int) 41 => 'Testis',
(int) 42 => 'Adipose',
(int) 43 => 'Adrenal',
(int) 44 => 'Bladder',
(int) 45 => 'Brain',
(int) 46 => 'Breast',
(int) 47 => 'Colon',
(int) 48 => 'Heart',
(int) 49 => 'Kidney',
(int) 50 => 'Liver',
(int) 51 => 'Lung',
(int) 52 => 'Muscle',
(int) 53 => 'Ovary',
(int) 54 => 'Placenta',
(int) 55 => 'Testis'
)
),
'CIL_0007JB_0004' => array(
'genes_in_region' => array(
'ENSG00000255580' => array(
[maximum depth reached]
),
'ENSG00000256972' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Heart',
(int) 4 => 'Liver',
(int) 5 => 'Adrenal',
(int) 6 => 'Kidney',
(int) 7 => 'Ovary',
(int) 8 => 'Testis'
)
),
'CIL_0007JB_0005' => array(
'genes_in_region' => array(
'ENSG00000255580' => array(
[maximum depth reached]
),
'ENSG00000256315' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Heart',
(int) 4 => 'Liver',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Bladder',
(int) 8 => 'Brain',
(int) 9 => 'Breast',
(int) 10 => 'Colon',
(int) 11 => 'Heart',
(int) 12 => 'Liver',
(int) 13 => 'Muscle',
(int) 14 => 'Ovary',
(int) 15 => 'Testis',
(int) 16 => 'Adrenal',
(int) 17 => 'Brain',
(int) 18 => 'Testis'
)
),
'CIL_0007JB_0007' => array(
'genes_in_region' => array(
'ENSG00000182985' => array(
[maximum depth reached]
),
'ENSG00000239600' => array(
[maximum depth reached]
),
'ENSG00000244259' => array(
[maximum depth reached]
),
'ENSG00000246100' => array(
[maximum depth reached]
),
'ENSG00000255599' => array(
[maximum depth reached]
),
'ENSG00000255689' => array(
[maximum depth reached]
),
'ENSG00000257067' => array(
[maximum depth reached]
),
'ENSG00000257087' => array(
[maximum depth reached]
),
'ENSG00000260254' => array(
[maximum depth reached]
),
'ENSG00000279771' => array(
[maximum depth reached]
),
'ENSG00000279818' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Kidney',
(int) 2 => 'Liver',
(int) 3 => 'Brain',
(int) 4 => 'Colon',
(int) 5 => 'Testis',
(int) 6 => 'Adipose',
(int) 7 => 'Bladder',
(int) 8 => 'Breast',
(int) 9 => 'Colon',
(int) 10 => 'Heart',
(int) 11 => 'Lung',
(int) 12 => 'Ovary',
(int) 13 => 'Placenta',
(int) 14 => 'Bladder',
(int) 15 => 'Heart',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Colon',
(int) 27 => 'Ovary',
(int) 28 => 'Breast',
(int) 29 => 'Heart',
(int) 30 => 'Liver',
(int) 31 => 'Ovary',
(int) 32 => 'Placenta',
(int) 33 => 'Testis',
(int) 34 => 'Brain',
(int) 35 => 'Colon',
(int) 36 => 'Heart',
(int) 37 => 'Kidney',
(int) 38 => 'Muscle',
(int) 39 => 'Kidney',
(int) 40 => 'Liver',
(int) 41 => 'Testis',
(int) 42 => 'Adipose',
(int) 43 => 'Adrenal',
(int) 44 => 'Bladder',
(int) 45 => 'Brain',
(int) 46 => 'Breast',
(int) 47 => 'Colon',
(int) 48 => 'Heart',
(int) 49 => 'Kidney',
(int) 50 => 'Liver',
(int) 51 => 'Lung',
(int) 52 => 'Muscle',
(int) 53 => 'Ovary',
(int) 54 => 'Placenta',
(int) 55 => 'Testis',
(int) 56 => 'Testis',
(int) 57 => 'Adipose',
(int) 58 => 'Adrenal',
(int) 59 => 'Breast',
(int) 60 => 'Colon',
(int) 61 => 'Heart',
(int) 62 => 'Kidney',
(int) 63 => 'Lung',
(int) 64 => 'Ovary',
(int) 65 => 'Testis',
(int) 66 => 'Adipose',
(int) 67 => 'Brain',
(int) 68 => 'Breast',
(int) 69 => 'Colon',
(int) 70 => 'Heart',
(int) 71 => 'Kidney',
(int) 72 => 'Liver',
(int) 73 => 'Lung',
(int) 74 => 'Muscle',
(int) 75 => 'Ovary',
(int) 76 => 'Placenta',
(int) 77 => 'Adipose',
(int) 78 => 'Brain',
(int) 79 => 'Lung',
(int) 80 => 'Ovary',
(int) 81 => 'Placenta',
(int) 82 => 'Brain',
(int) 83 => 'Breast',
(int) 84 => 'Colon',
(int) 85 => 'Heart',
(int) 86 => 'Kidney',
(int) 87 => 'Liver',
(int) 88 => 'Muscle',
(int) 89 => 'Ovary',
(int) 90 => 'Placenta',
(int) 91 => 'Testis',
(int) 92 => 'Breast',
(int) 93 => 'Colon',
(int) 94 => 'Ovary',
(int) 95 => 'Placenta',
(int) 96 => 'Testis',
(int) 97 => 'Brain',
(int) 98 => 'Breast',
(int) 99 => 'Colon',
(int) 100 => 'Heart',
(int) 101 => 'Kidney',
(int) 102 => 'Liver',
(int) 103 => 'Ovary',
(int) 104 => 'Placenta',
(int) 105 => 'Testis',
(int) 106 => 'Adrenal',
(int) 107 => 'Brain',
(int) 108 => 'Breast',
(int) 109 => 'Ovary',
(int) 110 => 'Testis',
(int) 111 => 'Ovary',
(int) 112 => 'Testis',
(int) 113 => 'Muscle',
(int) 114 => 'Brain',
(int) 115 => 'Heart',
(int) 116 => 'Kidney',
(int) 117 => 'Testis',
(int) 118 => 'Adrenal',
(int) 119 => 'Brain',
(int) 120 => 'Breast',
(int) 121 => 'Heart',
(int) 122 => 'Kidney',
(int) 123 => 'Liver',
(int) 124 => 'Lung',
(int) 125 => 'Muscle',
(int) 126 => 'Ovary',
(int) 127 => 'Testis',
(int) 128 => 'Adrenal',
(int) 129 => 'Brain',
(int) 130 => 'Breast',
(int) 131 => 'Heart',
(int) 132 => 'Kidney',
(int) 133 => 'Muscle',
(int) 134 => 'Ovary',
(int) 135 => 'Placenta',
(int) 136 => 'Testis'
)
),
'CIL_0007JB_0009' => array(
'genes_in_region' => array(
'ENSMUSG00000032076' => array(
[maximum depth reached]
),
'ENSMUSG00000094893' => array(
[maximum depth reached]
),
'ENSMUSG00000099696' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Liver',
(int) 7 => 'Lung',
(int) 8 => 'Muscle',
(int) 9 => 'Placenta',
(int) 10 => 'Testis',
(int) 11 => 'Adrenal',
(int) 12 => 'Breast',
(int) 13 => 'Colon',
(int) 14 => 'Kidney',
(int) 15 => 'Liver',
(int) 16 => 'Muscle',
(int) 17 => 'Ovary',
(int) 18 => 'Placenta',
(int) 19 => 'Testis',
(int) 20 => 'Adipose',
(int) 21 => 'Adrenal',
(int) 22 => 'Bladder',
(int) 23 => 'Breast',
(int) 24 => 'Colon',
(int) 25 => 'Heart',
(int) 26 => 'Kidney',
(int) 27 => 'Liver',
(int) 28 => 'Lung',
(int) 29 => 'Muscle',
(int) 30 => 'Ovary',
(int) 31 => 'Placenta',
(int) 32 => 'Brain',
(int) 33 => 'Colon',
(int) 34 => 'Muscle',
(int) 35 => 'Testis',
(int) 36 => 'Breast',
(int) 37 => 'Colon',
(int) 38 => 'Heart',
(int) 39 => 'Kidney',
(int) 40 => 'Liver',
(int) 41 => 'Ovary',
(int) 42 => 'Adrenal',
(int) 43 => 'Adipose',
(int) 44 => 'Adrenal',
(int) 45 => 'Breast',
(int) 46 => 'Colon',
(int) 47 => 'Heart',
(int) 48 => 'Liver',
(int) 49 => 'Ovary',
(int) 50 => 'Placenta',
(int) 51 => 'Testis',
(int) 52 => 'Heart',
(int) 53 => 'Muscle',
(int) 54 => 'Ovary',
(int) 55 => 'Placenta',
(int) 56 => 'Testis',
(int) 57 => 'Adipose',
(int) 58 => 'Brain',
(int) 59 => 'Lung',
(int) 60 => 'Ovary',
(int) 61 => 'Testis',
(int) 62 => 'Brain',
(int) 63 => 'Breast',
(int) 64 => 'Colon',
(int) 65 => 'Heart',
(int) 66 => 'Kidney',
(int) 67 => 'Liver',
(int) 68 => 'Muscle',
(int) 69 => 'Placenta',
(int) 70 => 'Testis',
(int) 71 => 'Adipose',
(int) 72 => 'Adrenal',
(int) 73 => 'Bladder',
(int) 74 => 'Brain',
(int) 75 => 'Breast',
(int) 76 => 'Heart',
(int) 77 => 'Kidney',
(int) 78 => 'Liver',
(int) 79 => 'Muscle',
(int) 80 => 'Ovary',
(int) 81 => 'Placenta',
(int) 82 => 'Testis',
(int) 83 => 'Bladder',
(int) 84 => 'Brain'
)
)
)
$gene_desc_arr = array(
'ENSG00000182985' => 'cell adhesion molecule 1',
'ENSG00000252870' => 'Small nucleolar RNA ACA59',
'ENSG00000255580' => null,
'ENSG00000256972' => null,
'ENSG00000256315' => null,
'ENSG00000239153' => 'Small nucleolar RNA U13',
'ENSG00000239600' => null,
'ENSG00000244259' => null,
'ENSG00000246100' => 'long intergenic non-protein coding RNA 900',
'ENSG00000255599' => null,
'ENSG00000255689' => null,
'ENSG00000255903' => null,
'ENSG00000256281' => null,
'ENSG00000256717' => null,
'ENSG00000257067' => null,
'ENSG00000257087' => null,
'ENSG00000260254' => null,
'ENSG00000279771' => null,
'ENSG00000279818' => null,
'ENSMUSG00000032076' => 'cell adhesion molecule 1',
'ENSMUSG00000094893' => 'predicted gene 4791',
'ENSMUSG00000094895' => 'predicted gene, 22286',
'ENSMUSG00000099696' => 'RIKEN cDNA 2900052N01 gene'
)
$gene_name_arr = array(
'ENSG00000182985' => 'CADM1',
'ENSG00000252870' => 'ACA59',
'ENSG00000255580' => 'AP000462.2',
'ENSG00000256972' => 'AP000462.3',
'ENSG00000256315' => 'AP000462.1',
'ENSG00000239153' => 'snoU13',
'ENSG00000239600' => 'AP000797.2',
'ENSG00000244259' => 'AP000797.1',
'ENSG00000246100' => 'LINC00900',
'ENSG00000255599' => 'AP000997.1',
'ENSG00000255689' => 'RP11-136I14.5',
'ENSG00000255903' => 'RP11-136I14.4',
'ENSG00000256281' => 'RP11-136I14.2',
'ENSG00000256717' => 'AP000797.3',
'ENSG00000257067' => 'AP000797.4',
'ENSG00000257087' => 'RP11-136I14.3',
'ENSG00000260254' => 'AP000997.2',
'ENSG00000279771' => 'AP000997.3',
'ENSG00000279818' => 'CTC-774J1.1',
'ENSMUSG00000032076' => 'Cadm1',
'ENSMUSG00000094893' => 'Gm4791',
'ENSMUSG00000094895' => 'Gm22286',
'ENSMUSG00000099696' => 'RP24-247B20.1'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JB_0001',
'tax_id' => '9606',
'chromosome' => '11',
'seq_start' => '114847802',
'seq_end' => '114876827',
'region_length' => '29025',
'region_type' => 'UCNEbase',
'el_id' => 'CADM1'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JB_0002',
'tax_id' => '9606',
'chromosome' => '11',
'seq_start' => '114876828',
'seq_end' => '114879627',
'region_length' => '2799',
'region_type' => 'UCNEbase',
'el_id' => 'CADM1'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JB_0003',
'tax_id' => '9606',
'chromosome' => '11',
'seq_start' => '114879628',
'seq_end' => '115317708',
'region_length' => '438080',
'region_type' => 'UCNEbase',
'el_id' => 'CADM1'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JB_0004',
'tax_id' => '9606',
'chromosome' => '11',
'seq_start' => '115317709',
'seq_end' => '115366061',
'region_length' => '48352',
'region_type' => 'UCNEbase',
'el_id' => 'CADM1'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JB_0005',
'tax_id' => '9606',
'chromosome' => '11',
'seq_start' => '115366062',
'seq_end' => '115420641',
'region_length' => '54579',
'region_type' => 'UCNEbase',
'el_id' => 'CADM1'
)
),
(int) 5 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JB_0006',
'tax_id' => '9606',
'chromosome' => '11',
'seq_start' => '115420641',
'seq_end' => '115489206',
'region_length' => '68565',
'region_type' => 'UCNEbase',
'el_id' => 'CADM1'
)
),
(int) 6 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JB_0007',
'tax_id' => '9606',
'chromosome' => '11',
'seq_start' => '115489207',
'seq_end' => '116083402',
'region_length' => '594195',
'region_type' => 'UCNEbase',
'el_id' => 'CADM1'
)
),
(int) 7 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JB_0008',
'tax_id' => '9606',
'chromosome' => '11',
'seq_start' => '116083403',
'seq_end' => '116129738',
'region_length' => '46335',
'region_type' => 'UCNEbase',
'el_id' => 'CADM1'
)
),
(int) 8 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JB_0009',
'tax_id' => '10090',
'chromosome' => '9',
'seq_start' => '46899838',
'seq_end' => '48183264',
'region_length' => '1283426',
'region_type' => 'UCNEbase',
'el_id' => 'CADM1'
)
),
(int) 9 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JB_000A',
'tax_id' => '7955',
'chromosome' => '21',
'seq_start' => '23658701',
'seq_end' => '23686184',
'region_length' => '27483',
'region_type' => 'UCNEbase',
'el_id' => 'CADM1'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 12 => 'Adrenal',
(int) 28 => 'Bladder',
(int) 40 => 'Brain',
(int) 69 => 'Breast',
(int) 95 => 'Colon',
(int) 118 => 'Heart',
(int) 148 => 'Kidney',
(int) 171 => 'Liver',
(int) 195 => 'Lung',
(int) 208 => 'Muscle',
(int) 225 => 'Ovary',
(int) 254 => 'Placenta',
(int) 275 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 91
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000331581' => array(
'start' => '115176295',
'end' => '115504565',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-003'
),
'ENST00000441886' => array(
'start' => '115190609',
'end' => '115214694',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CADM1-017'
),
'ENST00000452722' => array(
'start' => '115169236',
'end' => '115504415',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-001'
),
'ENST00000536727' => array(
'start' => '115174307',
'end' => '115504415',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-006'
),
'ENST00000536781' => array(
'start' => '115399084',
'end' => '115504415',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CADM1-012'
),
'ENST00000537058' => array(
'start' => '115174307',
'end' => '115504415',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-005'
),
'ENST00000537140' => array(
'start' => '115169236',
'end' => '115504523',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CADM1-004'
),
'ENST00000540373' => array(
'start' => '115214699',
'end' => '115218144',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CADM1-016'
),
'ENST00000540852' => array(
'start' => '115176408',
'end' => '115191046',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CADM1-018'
),
'ENST00000540951' => array(
'start' => '115231440',
'end' => '115504415',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'CADM1-021'
),
'ENST00000541434' => array(
'start' => '115214490',
'end' => '115504394',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CADM1-007'
),
'ENST00000542447' => array(
'start' => '115173625',
'end' => '115504523',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-002'
),
'ENST00000542450' => array(
'start' => '115217940',
'end' => '115240980',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-015'
),
'ENST00000543249' => array(
'start' => '115229220',
'end' => '115504957',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-010'
),
'ENST00000543375' => array(
'start' => '115176330',
'end' => '115194110',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CADM1-020'
),
'ENST00000543540' => array(
'start' => '115229156',
'end' => '115287477',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-013'
),
'ENST00000545094' => array(
'start' => '115229189',
'end' => '115256891',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-014'
),
'ENST00000545380' => array(
'start' => '115175341',
'end' => '115504389',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-008'
),
'ENST00000545960' => array(
'start' => '115169218',
'end' => '115198440',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CADM1-011'
),
'ENST00000546000' => array(
'start' => '115176327',
'end' => '115179111',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CADM1-019'
),
'ENST00000612235' => array(
'start' => '115169589',
'end' => '115240422',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-201'
),
'ENST00000612471' => array(
'start' => '115173626',
'end' => '115240421',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-202'
),
'ENST00000616271' => array(
'start' => '115176467',
'end' => '115240421',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-203'
),
'ENST00000621043' => array(
'start' => '115176467',
'end' => '115240421',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-204'
),
'ENST00000621709' => array(
'start' => '115173626',
'end' => '115240421',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADM1-205'
),
'ENST00000517061' => array(
'start' => '115128218',
'end' => '115128373',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'ACA59.1-203'
),
'ENST00000535704' => array(
'start' => '115363629',
'end' => '115377931',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AP000462.2-001'
),
'ENST00000545593' => array(
'start' => '115333577',
'end' => '115340262',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AP000462.3-001'
),
'ENST00000539685' => array(
'start' => '115396820',
'end' => '115397577',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AP000462.1-002'
),
'ENST00000540545' => array(
'start' => '115396851',
'end' => '115397619',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AP000462.1-003'
),
'ENST00000543182' => array(
'start' => '115396756',
'end' => '115397658',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AP000462.1-001'
),
'ENST00000458951' => array(
'start' => '115627082',
'end' => '115627185',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'snoU13.1-233'
),
'ENST00000478870' => array(
'start' => '115951105',
'end' => '115951491',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AP000797.2-001'
),
'ENST00000475768' => array(
'start' => '115950196',
'end' => '115950801',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'AP000797.1-001'
),
'ENST00000499809' => array(
'start' => '115754248',
'end' => '115760194',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00900-001'
),
'ENST00000501294' => array(
'start' => '115757451',
'end' => '115760627',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00900-002'
),
'ENST00000514294' => array(
'start' => '115757463',
'end' => '115760197',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00900-003'
),
'ENST00000535683' => array(
'start' => '115757920',
'end' => '115760200',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00900-004'
),
'ENST00000537070' => array(
'start' => '115757717',
'end' => '115760186',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00900-005'
),
'ENST00000602803' => array(
'start' => '115758276',
'end' => '115758853',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00900-006'
),
'ENST00000424313' => array(
'start' => '115628065',
'end' => '115629743',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AP000997.1-001'
),
'ENST00000306533' => array(
'start' => '115582297',
'end' => '115600339',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-136I14.5-001'
),
'ENST00000436610' => array(
'start' => '115578049',
'end' => '115578243',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-136I14.4-001'
),
'ENST00000544663' => array(
'start' => '115532322',
'end' => '115532953',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-136I14.2-001'
),
'ENST00000539305' => array(
'start' => '115659658',
'end' => '115843146',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AP000797.3-001'
),
'ENST00000537491' => array(
'start' => '115932774',
'end' => '115942995',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AP000797.4-001'
),
'ENST00000539222' => array(
'start' => '115932857',
'end' => '115940210',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AP000797.4-002'
),
'ENST00000537926' => array(
'start' => '115538869',
'end' => '115539384',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-136I14.3-001'
),
'ENST00000564619' => array(
'start' => '115638563',
'end' => '115646962',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AP000997.2-001'
),
'ENST00000623333' => array(
'start' => '115659168',
'end' => '115661417',
'transcript_biotype' => 'TEC',
'transcript_name' => 'AP000997.3-001'
),
'ENST00000623807' => array(
'start' => '115731942',
'end' => '115734742',
'transcript_biotype' => 'TEC',
'transcript_name' => 'CTC-774J1.1-001'
),
'ENSMUST00000034581' => array(
'start' => '47530373',
'end' => '47850390',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cadm1-006'
),
'ENSMUST00000085909' => array(
'start' => '47530257',
'end' => '47851029',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cadm1-002'
),
'ENSMUST00000114547' => array(
'start' => '47530257',
'end' => '47853380',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cadm1-003'
),
'ENSMUST00000114548' => array(
'start' => '47530173',
'end' => '47853385',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cadm1-001'
),
'ENSMUST00000124073' => array(
'start' => '47530352',
'end' => '47819080',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Cadm1-007'
),
'ENSMUST00000143026' => array(
'start' => '47530244',
'end' => '47857637',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cadm1-005'
),
'ENSMUST00000148925' => array(
'start' => '47530352',
'end' => '47792583',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Cadm1-009'
),
'ENSMUST00000151624' => array(
'start' => '47530373',
'end' => '47814054',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Cadm1-008'
),
'ENSMUST00000152459' => array(
'start' => '47530211',
'end' => '47850587',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cadm1-004'
),
'ENSMUST00000178065' => array(
'start' => '46998931',
'end' => '47003338',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm4791-201'
),
'ENSMUST00000179708' => array(
'start' => '47525616',
'end' => '47525722',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm22286-201'
),
'ENSMUST00000185568' => array(
'start' => '46913603',
'end' => '46927366',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP24-247B20.1-002'
),
'ENSMUST00000189828' => array(
'start' => '46913627',
'end' => '46922567',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP24-247B20.1-003'
),
'ENSMUST00000191603' => array(
'start' => '46913493',
'end' => '46927366',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP24-247B20.1-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007JB_0003' => array(
'genes_in_region' => array(
'ENSG00000182985' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Kidney',
(int) 2 => 'Liver',
(int) 3 => 'Brain',
(int) 4 => 'Colon',
(int) 5 => 'Testis',
(int) 6 => 'Adipose',
(int) 7 => 'Bladder',
(int) 8 => 'Breast',
(int) 9 => 'Colon',
(int) 10 => 'Heart',
(int) 11 => 'Lung',
(int) 12 => 'Ovary',
(int) 13 => 'Placenta',
(int) 14 => 'Bladder',
(int) 15 => 'Heart',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Colon',
(int) 27 => 'Ovary',
(int) 28 => 'Breast',
(int) 29 => 'Heart',
(int) 30 => 'Liver',
(int) 31 => 'Ovary',
(int) 32 => 'Placenta',
(int) 33 => 'Testis',
(int) 34 => 'Brain',
(int) 35 => 'Colon',
(int) 36 => 'Heart',
(int) 37 => 'Kidney',
(int) 38 => 'Muscle',
(int) 39 => 'Kidney',
(int) 40 => 'Liver',
(int) 41 => 'Testis',
(int) 42 => 'Adipose',
(int) 43 => 'Adrenal',
(int) 44 => 'Bladder',
(int) 45 => 'Brain',
(int) 46 => 'Breast',
(int) 47 => 'Colon',
(int) 48 => 'Heart',
(int) 49 => 'Kidney',
(int) 50 => 'Liver',
(int) 51 => 'Lung',
(int) 52 => 'Muscle',
(int) 53 => 'Ovary',
(int) 54 => 'Placenta',
(int) 55 => 'Testis'
)
),
'CIL_0007JB_0004' => array(
'genes_in_region' => array(
'ENSG00000255580' => array(
[maximum depth reached]
),
'ENSG00000256972' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Heart',
(int) 4 => 'Liver',
(int) 5 => 'Adrenal',
(int) 6 => 'Kidney',
(int) 7 => 'Ovary',
(int) 8 => 'Testis'
)
),
'CIL_0007JB_0005' => array(
'genes_in_region' => array(
'ENSG00000255580' => array(
[maximum depth reached]
),
'ENSG00000256315' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Heart',
(int) 4 => 'Liver',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Bladder',
(int) 8 => 'Brain',
(int) 9 => 'Breast',
(int) 10 => 'Colon',
(int) 11 => 'Heart',
(int) 12 => 'Liver',
(int) 13 => 'Muscle',
(int) 14 => 'Ovary',
(int) 15 => 'Testis',
(int) 16 => 'Adrenal',
(int) 17 => 'Brain',
(int) 18 => 'Testis'
)
),
'CIL_0007JB_0007' => array(
'genes_in_region' => array(
'ENSG00000182985' => array(
[maximum depth reached]
),
'ENSG00000239600' => array(
[maximum depth reached]
),
'ENSG00000244259' => array(
[maximum depth reached]
),
'ENSG00000246100' => array(
[maximum depth reached]
),
'ENSG00000255599' => array(
[maximum depth reached]
),
'ENSG00000255689' => array(
[maximum depth reached]
),
'ENSG00000257067' => array(
[maximum depth reached]
),
'ENSG00000257087' => array(
[maximum depth reached]
),
'ENSG00000260254' => array(
[maximum depth reached]
),
'ENSG00000279771' => array(
[maximum depth reached]
),
'ENSG00000279818' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Kidney',
(int) 2 => 'Liver',
(int) 3 => 'Brain',
(int) 4 => 'Colon',
(int) 5 => 'Testis',
(int) 6 => 'Adipose',
(int) 7 => 'Bladder',
(int) 8 => 'Breast',
(int) 9 => 'Colon',
(int) 10 => 'Heart',
(int) 11 => 'Lung',
(int) 12 => 'Ovary',
(int) 13 => 'Placenta',
(int) 14 => 'Bladder',
(int) 15 => 'Heart',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Colon',
(int) 27 => 'Ovary',
(int) 28 => 'Breast',
(int) 29 => 'Heart',
(int) 30 => 'Liver',
(int) 31 => 'Ovary',
(int) 32 => 'Placenta',
(int) 33 => 'Testis',
(int) 34 => 'Brain',
(int) 35 => 'Colon',
(int) 36 => 'Heart',
(int) 37 => 'Kidney',
(int) 38 => 'Muscle',
(int) 39 => 'Kidney',
(int) 40 => 'Liver',
(int) 41 => 'Testis',
(int) 42 => 'Adipose',
(int) 43 => 'Adrenal',
(int) 44 => 'Bladder',
(int) 45 => 'Brain',
(int) 46 => 'Breast',
(int) 47 => 'Colon',
(int) 48 => 'Heart',
(int) 49 => 'Kidney',
(int) 50 => 'Liver',
(int) 51 => 'Lung',
(int) 52 => 'Muscle',
(int) 53 => 'Ovary',
(int) 54 => 'Placenta',
(int) 55 => 'Testis',
(int) 56 => 'Testis',
(int) 57 => 'Adipose',
(int) 58 => 'Adrenal',
(int) 59 => 'Breast',
(int) 60 => 'Colon',
(int) 61 => 'Heart',
(int) 62 => 'Kidney',
(int) 63 => 'Lung',
(int) 64 => 'Ovary',
(int) 65 => 'Testis',
(int) 66 => 'Adipose',
(int) 67 => 'Brain',
(int) 68 => 'Breast',
(int) 69 => 'Colon',
(int) 70 => 'Heart',
(int) 71 => 'Kidney',
(int) 72 => 'Liver',
(int) 73 => 'Lung',
(int) 74 => 'Muscle',
(int) 75 => 'Ovary',
(int) 76 => 'Placenta',
(int) 77 => 'Adipose',
(int) 78 => 'Brain',
(int) 79 => 'Lung',
(int) 80 => 'Ovary',
(int) 81 => 'Placenta',
(int) 82 => 'Brain',
(int) 83 => 'Breast',
(int) 84 => 'Colon',
(int) 85 => 'Heart',
(int) 86 => 'Kidney',
(int) 87 => 'Liver',
(int) 88 => 'Muscle',
(int) 89 => 'Ovary',
(int) 90 => 'Placenta',
(int) 91 => 'Testis',
(int) 92 => 'Breast',
(int) 93 => 'Colon',
(int) 94 => 'Ovary',
(int) 95 => 'Placenta',
(int) 96 => 'Testis',
(int) 97 => 'Brain',
(int) 98 => 'Breast',
(int) 99 => 'Colon',
(int) 100 => 'Heart',
(int) 101 => 'Kidney',
(int) 102 => 'Liver',
(int) 103 => 'Ovary',
(int) 104 => 'Placenta',
(int) 105 => 'Testis',
(int) 106 => 'Adrenal',
(int) 107 => 'Brain',
(int) 108 => 'Breast',
(int) 109 => 'Ovary',
(int) 110 => 'Testis',
(int) 111 => 'Ovary',
(int) 112 => 'Testis',
(int) 113 => 'Muscle',
(int) 114 => 'Brain',
(int) 115 => 'Heart',
(int) 116 => 'Kidney',
(int) 117 => 'Testis',
(int) 118 => 'Adrenal',
(int) 119 => 'Brain',
(int) 120 => 'Breast',
(int) 121 => 'Heart',
(int) 122 => 'Kidney',
(int) 123 => 'Liver',
(int) 124 => 'Lung',
(int) 125 => 'Muscle',
(int) 126 => 'Ovary',
(int) 127 => 'Testis',
(int) 128 => 'Adrenal',
(int) 129 => 'Brain',
(int) 130 => 'Breast',
(int) 131 => 'Heart',
(int) 132 => 'Kidney',
(int) 133 => 'Muscle',
(int) 134 => 'Ovary',
(int) 135 => 'Placenta',
(int) 136 => 'Testis'
)
),
'CIL_0007JB_0009' => array(
'genes_in_region' => array(
'ENSMUSG00000032076' => array(
[maximum depth reached]
),
'ENSMUSG00000094893' => array(
[maximum depth reached]
),
'ENSMUSG00000099696' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Liver',
(int) 7 => 'Lung',
(int) 8 => 'Muscle',
(int) 9 => 'Placenta',
(int) 10 => 'Testis',
(int) 11 => 'Adrenal',
(int) 12 => 'Breast',
(int) 13 => 'Colon',
(int) 14 => 'Kidney',
(int) 15 => 'Liver',
(int) 16 => 'Muscle',
(int) 17 => 'Ovary',
(int) 18 => 'Placenta',
(int) 19 => 'Testis',
(int) 20 => 'Adipose',
(int) 21 => 'Adrenal',
(int) 22 => 'Bladder',
(int) 23 => 'Breast',
(int) 24 => 'Colon',
(int) 25 => 'Heart',
(int) 26 => 'Kidney',
(int) 27 => 'Liver',
(int) 28 => 'Lung',
(int) 29 => 'Muscle',
(int) 30 => 'Ovary',
(int) 31 => 'Placenta',
(int) 32 => 'Brain',
(int) 33 => 'Colon',
(int) 34 => 'Muscle',
(int) 35 => 'Testis',
(int) 36 => 'Breast',
(int) 37 => 'Colon',
(int) 38 => 'Heart',
(int) 39 => 'Kidney',
(int) 40 => 'Liver',
(int) 41 => 'Ovary',
(int) 42 => 'Adrenal',
(int) 43 => 'Adipose',
(int) 44 => 'Adrenal',
(int) 45 => 'Breast',
(int) 46 => 'Colon',
(int) 47 => 'Heart',
(int) 48 => 'Liver',
(int) 49 => 'Ovary',
(int) 50 => 'Placenta',
(int) 51 => 'Testis',
(int) 52 => 'Heart',
(int) 53 => 'Muscle',
(int) 54 => 'Ovary',
(int) 55 => 'Placenta',
(int) 56 => 'Testis',
(int) 57 => 'Adipose',
(int) 58 => 'Brain',
(int) 59 => 'Lung',
(int) 60 => 'Ovary',
(int) 61 => 'Testis',
(int) 62 => 'Brain',
(int) 63 => 'Breast',
(int) 64 => 'Colon',
(int) 65 => 'Heart',
(int) 66 => 'Kidney',
(int) 67 => 'Liver',
(int) 68 => 'Muscle',
(int) 69 => 'Placenta',
(int) 70 => 'Testis',
(int) 71 => 'Adipose',
(int) 72 => 'Adrenal',
(int) 73 => 'Bladder',
(int) 74 => 'Brain',
(int) 75 => 'Breast',
(int) 76 => 'Heart',
(int) 77 => 'Kidney',
(int) 78 => 'Liver',
(int) 79 => 'Muscle',
(int) 80 => 'Ovary',
(int) 81 => 'Placenta',
(int) 82 => 'Testis',
(int) 83 => 'Bladder',
(int) 84 => 'Brain'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JB_000A',
'tax_id' => '7955',
'chromosome' => '21',
'seq_start' => '23658701',
'seq_end' => '23686184',
'region_length' => '27483',
'region_type' => 'UCNEbase',
'el_id' => 'CADM1'
)
)
$gene_el = array(
'ENSMUST00000185568' => array(
'Brain' => array(
'average_FPKM' => '0.807',
'stddev_FPKM' => '0.77'
),
'Breast' => array(
'average_FPKM' => '0.166',
'stddev_FPKM' => '0.04'
),
'Colon' => array(
'average_FPKM' => '0.077',
'stddev_FPKM' => '0.02'
),
'Heart' => array(
'average_FPKM' => '0.029',
'stddev_FPKM' => '0.00'
),
'Kidney' => array(
'average_FPKM' => '0.078',
'stddev_FPKM' => '0.01'
),
'Liver' => array(
'average_FPKM' => '0.012',
'stddev_FPKM' => '0.01'
),
'Muscle' => array(
'average_FPKM' => '0.018',
'stddev_FPKM' => '0.00'
),
'Placenta' => array(
'average_FPKM' => '0.002',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.217',
'stddev_FPKM' => '0.12'
)
),
'ENSMUST00000189828' => array(
'Adipose' => array(
'average_FPKM' => '0.019',
'stddev_FPKM' => '0.00'
),
'Adrenal' => array(
'average_FPKM' => '0.114',
'stddev_FPKM' => '0.01'
),
'Bladder' => array(
'average_FPKM' => '0.034',
'stddev_FPKM' => '0.01'
),
'Brain' => array(
'average_FPKM' => '1.151',
'stddev_FPKM' => '1.59'
),
'Breast' => array(
'average_FPKM' => '0.347',
'stddev_FPKM' => '0.11'
),
'Heart' => array(
'average_FPKM' => '0.057',
'stddev_FPKM' => '0.01'
),
'Kidney' => array(
'average_FPKM' => '0.039',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.004',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '0.043',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.194',
'stddev_FPKM' => '0.00'
),
'Placenta' => array(
'average_FPKM' => '0.026',
'stddev_FPKM' => '0.02'
),
'Testis' => array(
'average_FPKM' => '0.213',
'stddev_FPKM' => '0.09'
)
),
'ENSMUST00000191603' => array(
'Bladder' => array(
'average_FPKM' => '0.013',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.026',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSMUSG00000099696'
$is_first = false
$tran_el = array(
'Bladder' => array(
'average_FPKM' => '0.013',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.026',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENSMUST00000191603'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(CADM1)