C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sorting nexin 14
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032422 Snx14 10090 - 9:88376750-88438958 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000126405 Snx14-003 88381539-88438929 nonsense_mediated_decay
  ENSMUST00000126563 Snx14-004 88419698-88438912 retained_intron
  ENSMUST00000140439 Snx14-002 88376752-88398621 retained_intron
  ENSMUST00000165315 Snx14-001 88376750-88438951 protein_coding
  ENSMUST00000173011 Snx14-007 88376752-88438898 protein_coding
  ENSMUST00000173039 Snx14-005 88376764-88438958 protein_coding
  ENSMUST00000174806 Snx14-006 88376767-88438914 protein_coding
  ENSMUST00000187610 Snx14-008 88392206-88394474 retained_intron

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000126405ENSMUST00000126563ENSMUST00000165315ENSMUST00000173011ENSMUST00000173039ENSMUST00000174806
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000126405 2.071±0.00 9.186±1.59 N/A N/A 2.211±0.00 3.367±0.00 3.202±0.40 N/A 1.823±0.09 6.354±0.00 N/A N/A N/A N/A
ENSMUST00000126563 N/A 53.641±11.69 N/A N/A 12.545±3.86 17.138±5.47 N/A 6.527±0.00 6.908±1.77 18.762±2.90 N/A 17.431±3.62 N/A N/A
ENSMUST00000165315 4.312±1.51 N/A 16.537±0.86 N/A 3.167±0.36 5.175±0.00 3.791±0.90 4.667±1.35 6.151±2.30 7.453±1.94 N/A 9.893±5.25 12.758±2.25 8.320±1.45
ENSMUST00000173011 N/A N/A N/A N/A 3.487±0.16 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173039 N/A 8.337±2.50 N/A N/A 3.380±0.06 6.706±2.24 N/A 5.776±1.30 3.440±1.42 3.839±0.38 N/A 3.115±0.72 N/A 3.113±0.00
ENSMUST00000174806 N/A N/A N/A 9.361±0.00 N/A N/A 2.955±0.00 N/A N/A N/A 3.656±0.54 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007K0 CIL_0007K0_0002 UCNEbase 9:87376892-88455782
CIL_0008Z9 CIL_0008Z9_0002 VISTA 9:87836921-88439766
CIL_0007TL CIL_0007TL_0002 VISTA 9:87895357-88499255
CIL_0006BN CIL_0006BN_0003 CGP 9:88327197-88438958
CIL_0005XI CIL_0005XI_0002 CGP 9:88376750-88456616

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0015031 IEA protein transport
GO:0016021 IEA integral component of membrane
GO:0035091 IEA phosphatidylinositol binding
GO:0038032 IEA termination of G-protein coupled receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006332 snx14 sorting nexin 14 protein_coding Danio_rerio
ENSG00000135317 SNX14 sorting nexin 14 protein_coding Homo_sapiens

Loading